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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   AT3G28430   CLEC16A-like protein 
 ath-u.5   AT3G28430   CLEC16A-like protein 
 ath-r.7   AT3G28430   CLEC16A-like protein 
 ath-m.9   AT3G28430   CLEC16A-like protein 
 ath-e.2   AT3G28430   CLEC16A-like protein 
 ath-m.4.bio   AT3G28430   CLEC16A-like protein 
 ath-m.4.hor   AT3G28430   CLEC16A-like protein 
 ath-m.4.str   AT3G28430   CLEC16A-like protein 
 ath-m.4.tis   AT3G28430   CLEC16A-like protein 
 bra-r.6   103829489   protein TRANSPARENT TESTA 9 
 bra-r.6   103828329   protein TRANSPARENT TESTA 9 
 bna-r.1   106401248   protein TRANSPARENT TESTA 9 
 bna-r.1   106357617   protein TRANSPARENT TESTA 9 
 bna-r.1   106355267   protein TRANSPARENT TESTA 9 
 ghi-r.1   121225267   protein TRANSPARENT TESTA 9 
 ghi-r.1   107937193   protein TRANSPARENT TESTA 9 
 cit-r.1   102610159   protein TRANSPARENT TESTA 9 
 gma-u.5   100789779   protein TRANSPARENT TESTA 9 
 gma-u.5   100786267   protein TRANSPARENT TESTA 9 
 vvi-u.5   100253058   protein TRANSPARENT TESTA 9 
 ppo-u.5   7474720   protein TRANSPARENT TESTA 9 
 ppo-u.5   7490489   protein TRANSPARENT TESTA 9 
 mtr-u.5   11445431   protein TRANSPARENT TESTA 9 
 mtr-u.5   11445545   protein TRANSPARENT TESTA 9 
 sly-u.5   101267620   protein TRANSPARENT TESTA 9 
 sot-r.1   102605720   uncharacterized LOC102605720 
 nta-r.1   107799774   protein TRANSPARENT TESTA 9 
 nta-r.1   107760996   protein TRANSPARENT TESTA 9 
 osa-u.5   4335414   protein TRANSPARENT TESTA 9 
 zma-u.5   100383777   uncharacterized LOC100383777 
 tae-r.2   123045193   protein TRANSPARENT TESTA 9 
 tae-r.2   123188935   protein TRANSPARENT TESTA 9 
 tae-r.2   123053027   protein TRANSPARENT TESTA 9 
 hvu-r.1   123426416   protein TRANSPARENT TESTA 9 
 sbi-r.1   8079737   uncharacterized LOC8079737 
 sbi-r.1   8085777   uncharacterized LOC8085777 
 bdi-r.1   100843426   protein TRANSPARENT TESTA 9 
 cre-r.1   CHLRE_12g515250v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G28430 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G28430 (ath-m.4.lig coexpression data)

CoexMap"822473"


athAT3G28430 | Entrez gene ID : 822473      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 2 2 1 1 2 1 1 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1903415 [list] [network] flavonoid transport from endoplasmic reticulum to plant-type vacuole  (2 genes)  IMP  
GO:0044090 [list] [network] positive regulation of vacuole organization  (3 genes)  IMP  
GO:0009718 [list] [network] anthocyanin-containing compound biosynthetic process  (18 genes)  IDA  
GO:0001708 [list] [network] cell fate specification  (33 genes)  IMP  
GO:0016192 [list] [network] vesicle-mediated transport  (246 genes)  IMP  
GO CC
GO:0019898 [list] [network] extrinsic component of membrane  (30 genes)  IDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  IDA  
GO MF
Protein NP_566837.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  plas 2,  cyto_nucl 2,  chlo 1,  cysk_plas 1  (predict for NP_566837.1)
Subcellular
localization
TargetP
mito 8,  other 4  (predict for NP_566837.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
AT3G28430
ath-u.5
for
AT3G28430
ath-r.7
for
AT3G28430
ath-m.9
for
AT3G28430
ath-e.2
for
AT3G28430
ath-m.4.bio
for
AT3G28430
ath-m.4.hor
for
AT3G28430
ath-m.4.str
for
AT3G28430
ath-m.4.tis
for
AT3G28430
bra-r.6
for
103829489
bra-r.6
for
103828329
bna-r.1
for
106401248
bna-r.1
for
106357617
bna-r.1
for
106355267
ghi-r.1
for
121225267
ghi-r.1
for
107937193
cit-r.1
for
102610159
gma-u.5
for
100789779
gma-u.5
for
100786267
vvi-u.5
for
100253058
ppo-u.5
for
7474720
ppo-u.5
for
7490489
mtr-u.5
for
11445431
mtr-u.5
for
11445545
sly-u.5
for
101267620
sot-r.1
for
102605720
nta-r.1
for
107799774
nta-r.1
for
107760996
osa-u.5
for
4335414
zma-u.5
for
100383777
tae-r.2
for
123045193
tae-r.2
for
123188935
tae-r.2
for
123053027
hvu-r.1
for
123426416
sbi-r.1
for
8079737
sbi-r.1
for
8085777
bdi-r.1
for
100843426
cre-r.1
for
CHLRE_12g515250v5


Ortholog ID: 7236
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi sbi bdi cre
Symbol AT3G28430 LOC103829489 LOC103828329 LOC106357617 LOC106355267 LOC125576656 LOC121225267 LOC107937193 LOC102610159 LOC100789779 LOC100786267 LOC100253058 LOC7474720 LOC7490489 LOC11445431 LOC11445545 LOC101267620 LOC102605720 LOC107799774 LOC107760996 LOC4335414 LOC100383777 LOC123045193 LOC123188935 LOC123053027 LOC123426416 LOC8079737 LOC8085777 LOC100843426 CHLRE_12g515250v5
Function* CLEC16A-like protein protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9-like protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 uncharacterized LOC102605720 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 uncharacterized LOC100383777 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 protein TRANSPARENT TESTA 9 uncharacterized LOC8079737 uncharacterized LOC8085777 protein TRANSPARENT TESTA 9 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
bra04382 Cornified envelope formation 2
bra04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 4
bra04382 Cornified envelope formation 4
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 8
ghi04382 Cornified envelope formation 8
ghi03013 Nucleocytoplasmic transport 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 3
ghi04382 Cornified envelope formation 2
ghi03013 Nucleocytoplasmic transport 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma03250 Viral life cycle - HIV-1 2
gma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma00564 Glycerophospholipid metabolism 2
gma00565 Ether lipid metabolism 2
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822473 103829489 103828329 106357617 106355267 125576656 121225267 107937193 102610159 100789779 100786267 100253058 7474720 7490489 11445431 11445545 101267620 102605720 107799774 107760996 4335414 100383777 123045193 123188935 123053027 123426416 8079737 8085777 100843426 66055558
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