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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   RDR6   RNA-dependent RNA polymerase 6 
 ath-u.5   RDR6   RNA-dependent RNA polymerase 6 
 ath-r.7   RDR6   RNA-dependent RNA polymerase 6 
 ath-m.9   RDR6   RNA-dependent RNA polymerase 6 
 ath-e.2   RDR6   RNA-dependent RNA polymerase 6 
 ath-m.4.bio   RDR6   RNA-dependent RNA polymerase 6 
 ath-m.4.hor   RDR6   RNA-dependent RNA polymerase 6 
 ath-m.4.str   RDR6   RNA-dependent RNA polymerase 6 
 ath-m.4.tis   RDR6   RNA-dependent RNA polymerase 6 
 bra-r.6   103875370   RNA-dependent RNA polymerase 6 
 bna-r.1   111198138   RNA-dependent RNA polymerase 6-like 
 bna-r.1   106360573   RNA-dependent RNA polymerase 6 
 bna-r.1   106424065   RNA-dependent RNA polymerase 6 
 ghi-r.1   107958956   RNA-dependent RNA polymerase 6-like 
 ghi-r.1   107906882   RNA-dependent RNA polymerase 6 
 cit-r.1   102619723   RNA-dependent RNA polymerase 6-like 
 gma-u.5   100807347   RNA-dependent RNA polymerase 6 
 gma-u.5   100795178   RNA-dependent RNA polymerase 6 
 vvi-u.5   100262771   RNA-dependent RNA polymerase 6 
 ppo-u.5   7468633   RNA-dependent RNA polymerase 6 
 ppo-u.5   7462987   RNA-dependent RNA polymerase 6 
 mtr-u.5   11431963   RNA-dependent RNA polymerase 6 
 sly-u.5   101055593   RNA-dependent RNA polymerase 6 
 sot-r.1   102603611   RNA-dependent RNA polymerase 6-like 
 nta-r.1   107798716   RNA-dependent RNA polymerase 6 
 nta-r.1   142161631   RNA-dependent RNA polymerase 6-like 
 osa-u.5   4323938   probable RNA-dependent RNA polymerase SHL2 
 zma-u.5   100274261   uncharacterized LOC100274261 
 tae-r.2   123080716   probable RNA-dependent RNA polymerase SHL2 
 tae-r.2   123072503   probable RNA-dependent RNA polymerase SHL2 
 hvu-r.1   123445525   probable RNA-dependent RNA polymerase SHL2 
 sbi-r.1   8075421   probable RNA-dependent RNA polymerase SHL2 
 sbi-r.1   8072152   probable RNA-dependent RNA polymerase SHL2 
 bdi-r.1   100829667   probable RNA-dependent RNA polymerase SHL2 

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Top 50 coexpressed genes to RDR6 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RDR6 (ath-m.4.lig coexpression data)

CoexMap"824112"


athRDR6 | Entrez gene ID : 824112      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 2 1 1 1 2 1 1 2 1 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009616 [list] [network] RNAi-mediated antiviral immune response  (13 genes)  IMP  
GO:0010267 [list] [network] ta-siRNA processing  (15 genes)  IMP  
GO:0048544 [list] [network] recognition of pollen  (22 genes)  IMP  
GO:0035196 [list] [network] miRNA processing  (30 genes)  IMP  
GO:0030422 [list] [network] siRNA processing  (31 genes)  IEP TAS  
GO:0051607 [list] [network] defense response to virus  (55 genes)  IMP  
GO:0048440 [list] [network] carpel development  (94 genes)  IGI  
GO:0016441 [list] [network] post-transcriptional gene silencing  (103 genes)  TAS  
GO:0048467 [list] [network] gynoecium development  (108 genes)  IMP  
GO:0031047 [list] [network] regulatory ncRNA-mediated gene silencing  (179 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IGI  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003968 [list] [network] RNA-directed RNA polymerase activity  (3 genes)  ISS  
Protein NP_001327617.1 [sequence] [blastp]
NP_001327618.1 [sequence] [blastp]
NP_001327619.1 [sequence] [blastp]
NP_001327620.1 [sequence] [blastp]
NP_190519.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001327617.1)
cyto 5,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001327618.1)
cyto 5,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001327619.1)
cyto 5,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001327620.1)
cyto 5,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_190519.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001327617.1)
other 8  (predict for NP_001327618.1)
other 8  (predict for NP_001327619.1)
other 8  (predict for NP_001327620.1)
other 8  (predict for NP_190519.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
RDR6
ath-u.5
for
RDR6
ath-r.7
for
RDR6
ath-m.9
for
RDR6
ath-e.2
for
RDR6
ath-m.4.bio
for
RDR6
ath-m.4.hor
for
RDR6
ath-m.4.str
for
RDR6
ath-m.4.tis
for
RDR6
bra-r.6
for
103875370
bna-r.1
for
111198138
bna-r.1
for
106360573
bna-r.1
for
106424065
ghi-r.1
for
107958956
ghi-r.1
for
107906882
cit-r.1
for
102619723
gma-u.5
for
100807347
gma-u.5
for
100795178
vvi-u.5
for
100262771
ppo-u.5
for
7468633
ppo-u.5
for
7462987
mtr-u.5
for
11431963
sly-u.5
for
101055593
sot-r.1
for
102603611
nta-r.1
for
107798716
nta-r.1
for
142161631
osa-u.5
for
4323938
zma-u.5
for
100274261
tae-r.2
for
123080716
tae-r.2
for
123072503
hvu-r.1
for
123445525
sbi-r.1
for
8075421
sbi-r.1
for
8072152
bdi-r.1
for
100829667


Ortholog ID: 8380
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae hvu sbi sbi bdi
Symbol RDR6 LOC103875370 LOC111198138 LOC106360573 LOC106424065 LOC107958956 LOC107906882 LOC102619723 LOC100807347 LOC100795178 LOC100262771 LOC7468633 LOC7462987 LOC11431963 LOC101055593 LOC102603611 LOC107798716 LOC142161631 LOC4323938 LOC100274261 LOC123080716 LOC123072503 LOC123445525 LOC8075421 LOC8072152 LOC100829667
Function* RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6-like RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6-like RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6-like RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6-like RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6-like probable RNA-dependent RNA polymerase SHL2 uncharacterized LOC100274261 probable RNA-dependent RNA polymerase SHL2 probable RNA-dependent RNA polymerase SHL2 probable RNA-dependent RNA polymerase SHL2 probable RNA-dependent RNA polymerase SHL2 probable RNA-dependent RNA polymerase SHL2 probable RNA-dependent RNA polymerase SHL2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00511 Other glycan degradation 2
ath03013 Nucleocytoplasmic transport 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 4
bra00510 N-Glycan biosynthesis 3
bra00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00250 Alanine, aspartate and glutamate metabolism 2
bna00630 Glyoxylate and dicarboxylate metabolism 2
bna00910 Nitrogen metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824112 103875370 111198138 106360573 106424065 107958956 107906882 102619723 100807347 100795178 100262771 7468633 7462987 11431963 101055593 102603611 107798716 142161631 4323938 100274261 123080716 123072503 123445525 8075421 8072152 100829667
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