ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.lig	AT3G50620	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	AT3G50620	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-r.7	AT3G50620	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.9	AT3G50620	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-e.2	AT3G50620	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.bio	AT3G50620	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.hor	AT3G50620	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.str	AT3G50620	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.tis	AT3G50620	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	AT2G15730	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	AT4G34420	P-loop containing nucleoside triphosphate hydrolases superfamily protein
bra-r.6	103860431	nodulation protein H
bra-r.6	103860659	nodulation protein H
bra-r.6	103844350	nodulation protein H
bna-r.1	125575591	uncharacterized LOC125575591
bna-r.1	106426064	nodulation protein H
bna-r.1	106425647	nodulation protein H
ghi-r.1	107913208	nodulation protein H
ghi-r.1	107914315	nodulation protein H
ghi-r.1	107931626	nodulation protein H
cit-r.1	102628576	uncharacterized LOC102628576
cit-r.1	102608139	uncharacterized LOC102608139
gma-u.5	100778075	uncharacterized LOC100778075
vvi-u.5	100254393	uncharacterized LOC100254393
vvi-u.5	100245449	uncharacterized LOC100245449
ppo-u.5	7496986	uncharacterized LOC7496986
ppo-u.5	7457521	uncharacterized LOC7457521
ppo-u.5	18097812	uncharacterized LOC18097812
mtr-u.5	120577757	uncharacterized LOC120577757
mtr-u.5	11407349	uncharacterized LOC11407349
sly-u.5	101247177	uncharacterized LOC101247177
sly-u.5	101247671	uncharacterized LOC101247671
sly-u.5	101248243	uncharacterized LOC101248243
sot-r.1	102596769	nodulation protein H-like
sot-r.1	102578196	nodulation protein H-like
sot-r.1	102599099	uncharacterized LOC102599099
nta-r.1	107767029	uncharacterized LOC107767029
nta-r.1	107830572	uncharacterized LOC107830572
nta-r.1	107804812	uncharacterized LOC107804812
osa-u.5	9271725	uncharacterized LOC9271725
osa-u.5	4327037	uncharacterized LOC4327037
osa-u.5	4333032	uncharacterized LOC4333032
zma-u.5	100384402	P-loop containing nucleoside triphosphate hydrolase superfamily protein
zma-u.5	100274889	uncharacterized LOC100274889
zma-u.5	100274572	P-loop containing nucleoside triphosphate hydrolase superfamily protein
tae-r.2	123079400	nodulation protein H
tae-r.2	123187746	nodulation protein H
tae-r.2	123132066	nodulation protein H
hvu-r.1	123445144	uncharacterized LOC123445144
hvu-r.1	123444588	nodulation protein H-like
hvu-r.1	123425031	nodulation protein H-like
sbi-r.1	8064040	nodulation protein H
sbi-r.1	8072207	nodulation protein H
sbi-r.1	8080445	uncharacterized LOC8080445
bdi-r.1	100845427	uncharacterized LOC100845427
bdi-r.1	100830088	nodulation protein H
bdi-r.1	100825055	uncharacterized LOC100825055

Top 50 coexpressed genes to AT3G50620 (ath-m.4.lig coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G50620 (ath-m.4.lig coexpression data)

CoexMap"824225"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005576 [list] [network] extracellular region

(3158 genes)

ISM

GO MF

GO:0008146 [list] [network] sulfotransferase activity

(15 genes)

IEA

Protein

NP_001327231.1 [sequence] [blastp]
NP_001327232.1 [sequence] [blastp]
NP_190631.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, E.R. 2, nucl 1, plas 1, nucl_plas 1, E.R._vacu 1	(predict for NP_001327231.1)
chlo 4, E.R. 2, nucl 1, plas 1, nucl_plas 1, E.R._vacu 1	(predict for NP_001327232.1)
cyto 4, E.R. 2, nucl 2, E.R._plas 2, plas 1, cysk_nucl 1	(predict for NP_190631.2)

Subcellular
localization
TargetP

scret 7	(predict for NP_001327231.1)
scret 7	(predict for NP_001327232.1)
other 8	(predict for NP_190631.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.lig for AT3G50620	ath-u.5 for AT3G50620	ath-r.7 for AT3G50620	ath-m.9 for AT3G50620	ath-e.2 for AT3G50620	ath-m.4.bio for AT3G50620	ath-m.4.hor for AT3G50620	ath-m.4.str for AT3G50620	ath-m.4.tis for AT3G50620	ath-u.5 for AT2G15730	ath-u.5 for AT4G34420	bra-r.6 for 103860431	bra-r.6 for 103860659	bra-r.6 for 103844350	bna-r.1 for 125575591	bna-r.1 for 106426064	bna-r.1 for 106425647	ghi-r.1 for 107913208	ghi-r.1 for 107914315	ghi-r.1 for 107931626	cit-r.1 for 102628576	cit-r.1 for 102608139	gma-u.5 for 100778075	vvi-u.5 for 100254393	vvi-u.5 for 100245449	ppo-u.5 for 7496986	ppo-u.5 for 7457521	ppo-u.5 for 18097812	mtr-u.5 for 120577757	mtr-u.5 for 11407349	sly-u.5 for 101247177	sly-u.5 for 101247671	sly-u.5 for 101248243	sot-r.1 for 102596769	sot-r.1 for 102578196	sot-r.1 for 102599099	nta-r.1 for 107767029	nta-r.1 for 107830572	nta-r.1 for 107804812	osa-u.5 for 9271725	osa-u.5 for 4327037	osa-u.5 for 4333032	zma-u.5 for 100384402	zma-u.5 for 100274889	zma-u.5 for 100274572	tae-r.2 for 123079400	tae-r.2 for 123187746	tae-r.2 for 123132066	hvu-r.1 for 123445144	hvu-r.1 for 123444588	hvu-r.1 for 123425031	sbi-r.1 for 8064040	sbi-r.1 for 8072207	sbi-r.1 for 8080445	bdi-r.1 for 100845427	bdi-r.1 for 100830088	bdi-r.1 for 100825055

Ortholog

Ortholog ID: 789

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

P-loop containing nucleoside triphosphate hydrolases superfamily protein

nodulation protein H

uncharacterized LOC107942657

nodulation protein H

uncharacterized LOC102628576

uncharacterized LOC102608139

uncharacterized LOC100778075

uncharacterized LOC100797055

uncharacterized LOC100254393

uncharacterized LOC100253782

uncharacterized LOC7496986

uncharacterized LOC18097812

uncharacterized LOC7476376

uncharacterized LOC120577757

uncharacterized LOC101247177

uncharacterized LOC101247671

uncharacterized LOC101249244

nodulation protein H-like

uncharacterized LOC102601898

uncharacterized LOC107830572

uncharacterized LOC107782942

uncharacterized LOC107768087

uncharacterized LOC9271725

uncharacterized LOC4327037

uncharacterized LOC4344087

P-loop containing nucleoside triphosphate hydrolase superfamily protein

nodulation protein H

uncharacterized LOC123071863

uncharacterized LOC123445144

nodulation protein H-like

nodulation protein H

uncharacterized LOC8080445

uncharacterized LOC100845427

nodulation protein H

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	13
bra00360	Phenylalanine metabolism	4
bra00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
bra00941	Flavonoid biosynthesis	4
bra00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04145	Phagosome	4
bra04517	IgSF CAM signaling	4
bra04814	Motor proteins	4
bra00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00053	Ascorbate and aldarate metabolism	2
bna00562	Inositol phosphate metabolism	2
bna01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	3
gma00514	Other types of O-glycan biosynthesis	2
gma03083	Polycomb repressive complex	2
gma00020	Citrate cycle (TCA cycle)	2
gma00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01250	Biosynthesis of nucleotide sugars	4
vvi00520	Amino sugar and nucleotide sugar metabolism	3
vvi00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	3
sot00220	Arginine biosynthesis	2
sot00240	Pyrimidine metabolism	2
sot00250	Alanine, aspartate and glutamate metabolism	2
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	4
nta00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	3
osa00270	Cysteine and methionine metabolism	2
osa01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	4
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3
tae00230	Purine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	7
tae03250	Viral life cycle - HIV-1	3
tae03272	Virion - Hepatitis viruses	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3
tae04141	Protein processing in endoplasmic reticulum	2
tae03022	Basal transcription factors	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	5
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01212	Fatty acid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

824225

816067

829593

103860659

103840965

106361625

106444310

107914315

107942657

121222409

102628576

102608139

100778075

100797055

100254393

100253782

7496986

18097812

7476376

120577757

101247177

101247671

101249244

102596769

102578196

102601898

107830572

107782942

107768087

9271725

4327037

4344087

100274572

100277054

100278656

123187746

123071026

123071863

123445144

123444588

123425031

8064040

8072207

8080445

100845427

100830088

100840597

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	3	3	2	1	2	3	2	3	3	3	3	3	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G50620 (ath-m.4.lig coexpression data)

Top 50 enrichment test to AT3G50620 (ath-m.4.lig coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**