ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.lig	AT4G09830	nuclear receptor family 2 group C protein
ath-u.5	AT4G09830	nuclear receptor family 2 group C protein
ath-r.7	AT4G09830	nuclear receptor family 2 group C protein
ath-m.9	AT4G09830	nuclear receptor family 2 group C protein
ath-e.2	AT4G09830	nuclear receptor family 2 group C protein
ath-m.4.bio	AT4G09830	nuclear receptor family 2 group C protein
ath-m.4.hor	AT4G09830	nuclear receptor family 2 group C protein
ath-m.4.str	AT4G09830	nuclear receptor family 2 group C protein
ath-m.4.tis	AT4G09830	nuclear receptor family 2 group C protein
ath-u.5	AT5G64780	holocarboxylase synthetase
bra-r.6	103873905	uncharacterized LOC103873905
bra-r.6	103858542	uncharacterized LOC103858542
bra-r.6	103838878	uncharacterized LOC103838878
bna-r.1	125601742	uncharacterized LOC125601742
bna-r.1	BNAC09G24810D	uncharacterized BNAC09G24810D
bna-r.1	106423437	uncharacterized LOC106423437
ghi-r.1	107923431	uncharacterized LOC107923431
ghi-r.1	107899537	uncharacterized LOC107899537
ghi-r.1	107911659	uncharacterized LOC107911659
cit-r.1	102606673	uncharacterized LOC102606673
cit-r.1	102626479	uncharacterized LOC102626479
gma-u.5	100815955	uncharacterized LOC100815955
gma-u.5	100796484	uncharacterized LOC100796484
gma-u.5	100801119	uncharacterized LOC100801119
vvi-u.5	100256958	uncharacterized LOC100256958
vvi-u.5	100245741	uncharacterized LOC100245741
vvi-u.5	100854952	uncharacterized LOC100854952
ppo-u.5	18099630	uncharacterized LOC18099630
ppo-u.5	7468763	uncharacterized LOC7468763
ppo-u.5	18094282	uncharacterized LOC18094282
mtr-u.5	11436180	uncharacterized LOC11436180
mtr-u.5	11420350	uncharacterized LOC11420350
mtr-u.5	25496288	uncharacterized LOC25496288
sly-u.5	101258927	uncharacterized LOC101258927
sly-u.5	101255194	uncharacterized LOC101255194
sot-r.1	102584007	uncharacterized LOC102584007
sot-r.1	102606378	uncharacterized LOC102606378
nta-r.1	107765770	uncharacterized LOC107765770
nta-r.1	107801088	uncharacterized LOC107801088
nta-r.1	107819547	uncharacterized LOC107819547
osa-u.5	4346845	uncharacterized LOC4346845
osa-u.5	9272136	uncharacterized LOC9272136
osa-u.5	4345496	uncharacterized LOC4345496
zma-u.5	100216658	Uncharacterized conserved protein UCP009193
zma-u.5	100286155	holocarboxylase synthetase
zma-u.5	100282872	holocarboxylase synthetase
tae-r.2	542928	uncharacterized LOC542928
tae-r.2	123070024	uncharacterized LOC123070024
tae-r.2	123060439	uncharacterized LOC123060439
hvu-r.1	123443796	uncharacterized LOC123443796
hvu-r.1	123439510	uncharacterized LOC123439510
hvu-r.1	123395362	uncharacterized LOC123395362
sbi-r.1	8055566	uncharacterized LOC8055566
sbi-r.1	8078762	uncharacterized LOC8078762
sbi-r.1	8082463	uncharacterized LOC8082463
bdi-r.1	104584661	uncharacterized LOC104584661
bdi-r.1	100830936	uncharacterized LOC100830936
bdi-r.1	100833414	uncharacterized LOC100833414
cre-r.1	CHLRE_17g731900v5	uncharacterized protein

Top 50 coexpressed genes to AT4G09830 (ath-m.4.lig coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT4G09830 (ath-m.4.lig coexpression data)

CoexMap"826572"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_192721.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for NP_192721.1)

Subcellular
localization
TargetP

other 6, mito 5

(predict for NP_192721.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.lig for AT4G09830	ath-u.5 for AT4G09830	ath-r.7 for AT4G09830	ath-m.9 for AT4G09830	ath-e.2 for AT4G09830	ath-m.4.bio for AT4G09830	ath-m.4.hor for AT4G09830	ath-m.4.str for AT4G09830	ath-m.4.tis for AT4G09830	ath-u.5 for AT5G64780	bra-r.6 for 103873905	bra-r.6 for 103858542	bra-r.6 for 103838878	bna-r.1 for 125601742	bna-r.1 for BNAC09G24810D	bna-r.1 for 106423437	ghi-r.1 for 107923431	ghi-r.1 for 107899537	ghi-r.1 for 107911659	cit-r.1 for 102606673	cit-r.1 for 102626479	gma-u.5 for 100815955	gma-u.5 for 100796484	gma-u.5 for 100801119	vvi-u.5 for 100256958	vvi-u.5 for 100245741	vvi-u.5 for 100854952	ppo-u.5 for 18099630	ppo-u.5 for 7468763	ppo-u.5 for 18094282	mtr-u.5 for 11436180	mtr-u.5 for 11420350	mtr-u.5 for 25496288	sly-u.5 for 101258927	sly-u.5 for 101255194	sot-r.1 for 102584007	sot-r.1 for 102606378	nta-r.1 for 107765770	nta-r.1 for 107801088	nta-r.1 for 107819547	osa-u.5 for 4346845	osa-u.5 for 9272136	osa-u.5 for 4345496	zma-u.5 for 100216658	zma-u.5 for 100286155	zma-u.5 for 100282872	tae-r.2 for 542928	tae-r.2 for 123070024	tae-r.2 for 123060439	hvu-r.1 for 123443796	hvu-r.1 for 123439510	hvu-r.1 for 123395362	sbi-r.1 for 8055566	sbi-r.1 for 8078762	sbi-r.1 for 8082463	bdi-r.1 for 104584661	bdi-r.1 for 100830936	bdi-r.1 for 100833414	cre-r.1 for CHLRE_17g731900v5

Ortholog

Ortholog ID: 1548

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

nuclear receptor family 2 group C protein

holocarboxylase synthetase

uncharacterized LOC103873905

uncharacterized LOC103858542

uncharacterized LOC103838878

uncharacterized BNAC09G24810D

uncharacterized LOC106438502

uncharacterized LOC106360954

uncharacterized LOC107950596

uncharacterized LOC107950597

uncharacterized LOC107910469

uncharacterized LOC102606673

uncharacterized LOC102626479

uncharacterized LOC100815955

uncharacterized LOC100796484

uncharacterized LOC100801119

uncharacterized LOC100256958

uncharacterized LOC100245741

uncharacterized LOC100854952

uncharacterized LOC18099630

uncharacterized LOC7468763

uncharacterized LOC18094282

uncharacterized LOC11436180

uncharacterized LOC11420350

uncharacterized LOC25496288

uncharacterized LOC101258927

uncharacterized LOC101255194

uncharacterized LOC102584007

uncharacterized LOC102606378

uncharacterized LOC107765770

uncharacterized LOC107801088

uncharacterized LOC107819547

uncharacterized LOC9272136

uncharacterized LOC4345496

uncharacterized LOC4324451

Uncharacterized conserved protein UCP009193

holocarboxylase synthetase

uncharacterized LOC123070024

uncharacterized LOC123103559

uncharacterized LOC123068977

uncharacterized LOC123443796

uncharacterized LOC123439510

uncharacterized LOC123395362

uncharacterized LOC8055566

uncharacterized LOC8078762

uncharacterized LOC8082463

uncharacterized LOC104584661

uncharacterized LOC100833414

uncharacterized LOC100842848

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	3
bna04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04136	Autophagy - other	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	6
ghi03083	Polycomb repressive complex	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	2
cit04142	Lysosome	2
cit04145	Phagosome	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	7
gma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5
mtr03015	mRNA surveillance pathway	3
mtr03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	3
nta00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	4
zma03040	Spliceosome	2
zma03083	Polycomb repressive complex	2
zma04141	Protein processing in endoplasmic reticulum	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2
tae04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00513	Various types of N-glycan biosynthesis	2
hvu00190	Oxidative phosphorylation	2
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	4
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

826572

836599

103873905

103858542

103838878

106390635

106438502

106360954

107950596

107950597

107910469

102606673

102626479

100815955

100796484

100801119

100256958

100245741

100854952

18099630

7468763

18094282

11436180

11420350

25496288

101258927

101255194

102584007

102606378

107765770

107801088

107819547

9272136

4345496

4324451

100216658

100286155

100282872

123070024

123103559

123068977

123443796

123439510

123395362

8055566

8078762

8082463

104584661

100833414

100842848

5727052

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	3	3	3	2	3	3	3	3	2	2	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT4G09830 (ath-m.4.lig coexpression data)

Top 50 enrichment test to AT4G09830 (ath-m.4.lig coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**