ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.lig	TRH1	Potassium transporter family protein
ath-u.5	TRH1	Potassium transporter family protein
ath-r.7	TRH1	Potassium transporter family protein
ath-m.9	TRH1	Potassium transporter family protein
ath-e.2	TRH1	Potassium transporter family protein
ath-m.4.bio	TRH1	Potassium transporter family protein
ath-m.4.hor	TRH1	Potassium transporter family protein
ath-m.4.str	TRH1	Potassium transporter family protein
ath-m.4.tis	TRH1	Potassium transporter family protein
ath-u.5	KT1	potassium transporter 1
ath-u.5	KUP3	K+ uptake transporter 3
bra-r.6	103861321	potassium transporter 3
bra-r.6	103833893	potassium transporter 3
bra-r.6	103857290	potassium transporter 1
bna-r.1	125598305	potassium transporter 1-like
bna-r.1	111205434	potassium transporter 1-like
bna-r.1	111204399	potassium transporter 1-like
ghi-r.1	107896301	potassium transporter 4
ghi-r.1	107897489	probable potassium transporter 13
ghi-r.1	107924522	potassium transporter 4
cit-r.1	102607349	potassium transporter 3
cit-r.1	102609532	potassium transporter 4
cit-r.1	102614306	probable potassium transporter 13
gma-u.5	100819743	potassium transporter 3
gma-u.5	100810134	potassium transporter 4
gma-u.5	100800428	potassium transporter 1
vvi-u.5	100260429	potassium transporter 3
vvi-u.5	100259787	probable potassium transporter 13
vvi-u.5	100265199	potassium transporter 4
ppo-u.5	7466311	potassium transporter 4
ppo-u.5	7497530	probable potassium transporter 13
mtr-u.5	25502131	potassium transporter 3
mtr-u.5	11409954	potassium transporter 1
mtr-u.5	25495891	potassium transporter 4
sly-u.5	101252162	potassium transporter 4-like
sly-u.5	101262083	potassium transporter 4
sot-r.1	102588368	potassium transporter 4-like
sot-r.1	102604250	potassium transporter 4-like
sot-r.1	102587299	potassium transporter 4-like
nta-r.1	107830864	potassium transporter 4
nta-r.1	107826421	potassium transporter 4
nta-r.1	107812500	potassium transporter 4-like
osa-u.5	4344235	potassium transporter 7-like
osa-u.5	4341805	probable potassium transporter 13
osa-u.5	4326793	probable potassium transporter 2
zma-u.5	103633542	uncharacterized LOC103633542
zma-u.5	103650791	probable potassium transporter 2
tae-r.2	123043775	potassium transporter 7
tae-r.2	123080482	probable potassium transporter 2
tae-r.2	123051639	potassium transporter 7
hvu-r.1	123445368	probable potassium transporter 2
hvu-r.1	123424786	potassium transporter 7
sbi-r.1	8074423	potassium transporter 7
sbi-r.1	8077816	probable potassium transporter 3
bdi-r.1	100834171	probable potassium transporter 13
bdi-r.1	100845665	potassium transporter 7

Top 50 coexpressed genes to TRH1 (ath-m.4.lig coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to TRH1 (ath-m.4.lig coexpression data)

CoexMap"828464"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006813 [list] [network] potassium ion transport	(32 genes)	IC
GO:0048825 [list] [network] cotyledon development	(61 genes)	IMP
GO:0009932 [list] [network] cell tip growth	(184 genes)	IMP
GO:0009826 [list] [network] unidimensional cell growth	(310 genes)	IMP

GO CC

GO:0000325 [list] [network] plant-type vacuole	(788 genes)	HDA
GO:0016020 [list] [network] membrane	(3740 genes)	NAS
GO:0005739 [list] [network] mitochondrion	(4244 genes)	ISM

GO MF

GO:0015079 [list] [network] potassium ion transmembrane transporter activity

(53 genes)

IGI ISS

Protein

NP_194095.2 [sequence] [blastp]

Subcellular
localization
wolf

plas 8, vacu 1, E.R. 1, golg 1, E.R._vacu 1

(predict for NP_194095.2)

Subcellular
localization
TargetP

mito 7, scret 5

(predict for NP_194095.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.lig for TRH1	ath-u.5 for TRH1	ath-r.7 for TRH1	ath-m.9 for TRH1	ath-e.2 for TRH1	ath-m.4.bio for TRH1	ath-m.4.hor for TRH1	ath-m.4.str for TRH1	ath-m.4.tis for TRH1	ath-u.5 for KT1	ath-u.5 for KUP3	bra-r.6 for 103861321	bra-r.6 for 103833893	bra-r.6 for 103857290	bna-r.1 for 125598305	bna-r.1 for 111205434	bna-r.1 for 111204399	ghi-r.1 for 107896301	ghi-r.1 for 107897489	ghi-r.1 for 107924522	cit-r.1 for 102607349	cit-r.1 for 102609532	cit-r.1 for 102614306	gma-u.5 for 100819743	gma-u.5 for 100810134	gma-u.5 for 100800428	vvi-u.5 for 100260429	vvi-u.5 for 100259787	vvi-u.5 for 100265199	ppo-u.5 for 7466311	ppo-u.5 for 7497530	mtr-u.5 for 25502131	mtr-u.5 for 11409954	mtr-u.5 for 25495891	sly-u.5 for 101252162	sly-u.5 for 101262083	sot-r.1 for 102588368	sot-r.1 for 102604250	sot-r.1 for 102587299	nta-r.1 for 107830864	nta-r.1 for 107826421	nta-r.1 for 107812500	osa-u.5 for 4344235	osa-u.5 for 4341805	osa-u.5 for 4326793	zma-u.5 for 103633542	zma-u.5 for 103650791	tae-r.2 for 123043775	tae-r.2 for 123080482	tae-r.2 for 123051639	hvu-r.1 for 123445368	hvu-r.1 for 123424786	sbi-r.1 for 8074423	sbi-r.1 for 8077816	bdi-r.1 for 100834171	bdi-r.1 for 100845665

Ortholog

Ortholog ID: 893

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

TRH1

KT1

KUP3

Function^*

Potassium transporter family protein

potassium transporter 1

K+ uptake transporter 3

potassium transporter 3

potassium transporter 1

potassium transporter 1-like

potassium transporter 3-like

potassium transporter 4

potassium transporter 3

potassium transporter 4

probable potassium transporter 13

potassium transporter 1

potassium transporter 3

probable potassium transporter 13

potassium transporter 4

potassium transporter 1

potassium transporter 3

potassium transporter 1

potassium transporter 4

potassium transporter 4-like

potassium transporter 4

potassium transporter 4-like

potassium transporter 4

potassium transporter 4-like

potassium transporter 4

probable potassium transporter 13

probable potassium transporter 2

uncharacterized LOC103633542

uncharacterized LOC100194111

Potassium transporter 1

probable potassium transporter 2

probable potassium transporter 13

probable potassium transporter 2

potassium transporter 7

probable potassium transporter 13

probable potassium transporter 2

probable potassium transporter 13

potassium transporter 7

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath03018	RNA degradation	2
ath00190	Oxidative phosphorylation	2
ath04142	Lysosome	2
ath04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	8
ath04016	MAPK signaling pathway - plant	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	3
ath01240	Biosynthesis of cofactors	2
ath00260	Glycine, serine and threonine metabolism	2
ath00630	Glyoxylate and dicarboxylate metabolism	2
ath00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	5
bra04145	Phagosome	5
bra04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00500	Starch and sucrose metabolism	8
bna04075	Plant hormone signal transduction	4
bna04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	6
ghi04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	6
ghi04075	Plant hormone signal transduction	6
ghi00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	6
gma04144	Endocytosis	3
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00061	Fatty acid biosynthesis	3
ppo01212	Fatty acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	3
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00620	Pyruvate metabolism	2
sot00630	Glyoxylate and dicarboxylate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	4
nta00020	Citrate cycle (TCA cycle)	3
nta00480	Glutathione metabolism	3
nta01200	Carbon metabolism	3
nta01210	2-Oxocarboxylic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	6
nta04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	4
osa04016	MAPK signaling pathway - plant	2
osa04626	Plant-pathogen interaction	2
osa00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00511	Other glycan degradation	2
osa00040	Pentose and glucuronate interconversions	2
osa00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00562	Inositol phosphate metabolism	3
zma04070	Phosphatidylinositol signaling system	3
zma04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00071	Fatty acid degradation	2
bdi00592	alpha-Linolenic acid metabolism	2
bdi01212	Fatty acid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

828464

817558

821063

103861321

103833893

103867985

111205434

111204399

106422318

107924522

107948573

107950634

102609532

102614306

102629427

100819743

100777998

100260429

100259787

100249626

7497530

7462448

18102064

25502131

11409954

25495891

101252162

101262083

102588368

102604250

102587299

107830864

107769615

107761936

4341805

4326793

103633542

100194111

100279933

123080482

123149134

123445368

123424786

123412930

8062281

100834171

100845665

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	3	3	3	3	3	2	3	2	3	3	3	2	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to TRH1 (ath-m.4.lig coexpression data)

Top 50 enrichment test to TRH1 (ath-m.4.lig coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**