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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   PDE334   ATPase, F0 complex, subunit B/B', bacterial/chloroplast 
 ath-u.5   PDE334   ATPase, F0 complex, subunit B/B', bacterial/chloroplast 
 ath-r.7   PDE334   ATPase, F0 complex, subunit B/B', bacterial/chloroplast 
 ath-m.9   PDE334   ATPase, F0 complex, subunit B/B', bacterial/chloroplast 
 ath-e.2   PDE334   ATPase, F0 complex, subunit B/B', bacterial/chloroplast 
 ath-m.4.bio   PDE334   ATPase, F0 complex, subunit B/B', bacterial/chloroplast 
 ath-m.4.hor   PDE334   ATPase, F0 complex, subunit B/B', bacterial/chloroplast 
 ath-m.4.str   PDE334   ATPase, F0 complex, subunit B/B', bacterial/chloroplast 
 ath-m.4.tis   PDE334   ATPase, F0 complex, subunit B/B', bacterial/chloroplast 
 bra-r.6   103851204   ATP synthase subunit b', chloroplastic 
 bna-r.1   106370141   ATP synthase subunit b', chloroplastic-like 
 bna-r.1   106399213   ATP synthase subunit b', chloroplastic 
 cit-r.1   102626417   ATP synthase subunit b', chloroplastic 
 gma-u.5   100527009   putative ATP synthase subunit b' 
 vvi-u.5   109122511   ATP synthase subunit b', chloroplastic 
 ppo-u.5   7471598   ATP synthase subunit b', chloroplastic 
 ppo-u.5   7465390   ATP synthase subunit b', chloroplastic 
 mtr-u.5   11432459   ATP synthase subunit b', chloroplastic 
 sly-u.5   109120519   ATP synthase subunit b', chloroplastic 
 sly-u.5   101263124   ATP synthase subunit b', chloroplastic 
 sot-r.1   102584644   ATP synthase subunit b', chloroplastic-like 
 nta-r.1   107802241   ATP synthase subunit b', chloroplastic 
 nta-r.1   107791170   ATP synthase subunit b', chloroplastic-like 
 nta-r.1   107781811   ATP synthase subunit b', chloroplastic-like 
 osa-u.5   4332431   ATP synthase subunit b', chloroplastic 
 zma-u.5   100282566   uncharacterized LOC100282566 
 tae-r.2   123097873   ATP synthase subunit b', chloroplastic 
 tae-r.2   123092569   ATP synthase subunit b', chloroplastic 
 tae-r.2   123085474   ATP synthase subunit b', chloroplastic 
 hvu-r.1   123448996   ATP synthase subunit b', chloroplastic 
 sbi-r.1   8081476   ATP synthase subunit b', chloroplastic 
 bdi-r.1   100825720   ATP synthase subunit b', chloroplastic 
 cre-r.1   CHLRE_11g481450v5   uncharacterized protein 

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Top 50 coexpressed genes to PDE334 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PDE334 (ath-m.4.lig coexpression data)

CoexMap"829359"


athPDE334 | Entrez gene ID : 829359      
Species ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre ghi
Paralog 9 1 2 1 1 1 2 1 2 1 3 1 1 3 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00190 [list] [network] Oxidative phosphorylation (170 genes)
ath00195 [list] [network] Photosynthesis (77 genes)
GO BP
GO:0015986 [list] [network] proton motive force-driven ATP synthesis  (7 genes)  IEA  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0015078 [list] [network] proton transmembrane transporter activity  (115 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_194953.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_194953.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_194953.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
PDE334
ath-u.5
for
PDE334
ath-r.7
for
PDE334
ath-m.9
for
PDE334
ath-e.2
for
PDE334
ath-m.4.bio
for
PDE334
ath-m.4.hor
for
PDE334
ath-m.4.str
for
PDE334
ath-m.4.tis
for
PDE334
bra-r.6
for
103851204
bna-r.1
for
106370141
bna-r.1
for
106399213
cit-r.1
for
102626417
gma-u.5
for
100527009
vvi-u.5
for
109122511
ppo-u.5
for
7471598
ppo-u.5
for
7465390
mtr-u.5
for
11432459
sly-u.5
for
109120519
sly-u.5
for
101263124
sot-r.1
for
102584644
nta-r.1
for
107802241
nta-r.1
for
107791170
nta-r.1
for
107781811
osa-u.5
for
4332431
zma-u.5
for
100282566
tae-r.2
for
123097873
tae-r.2
for
123092569
tae-r.2
for
123085474
hvu-r.1
for
123448996
sbi-r.1
for
8081476
bdi-r.1
for
100825720
cre-r.1
for
CHLRE_11g481450v5


Ortholog ID: 7688
Species ath bra bna bna cit gma vvi ppo ppo mtr sly sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol PDE334 LOC103851204 LOC106370141 LOC106399213 LOC102626417 LOC100527009 LOC109122511 LOC7471598 LOC7465390 LOC11432459 LOC109120519 LOC101263124 LOC102584644 LOC107802241 LOC107791170 LOC107786267 LOC4332431 LOC100282566 LOC123097873 LOC123092569 LOC123085474 LOC123448996 LOC8081476 LOC100825720 CHLRE_11g481450v5
Function* ATPase, F0 complex, subunit B/B', bacterial/chloroplast ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic-like ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic putative ATP synthase subunit b' ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic-like ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic-like ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic uncharacterized LOC100282566 ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic ATP synthase subunit b', chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 10
ath00190 Oxidative phosphorylation 2
ath00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 7
bra00710 Carbon fixation by Calvin cycle 6
bra00195 Photosynthesis 4
bra00010 Glycolysis / Gluconeogenesis 3
bra01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 9
bna00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 9
bna00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 3
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 3
gma01240 Biosynthesis of cofactors 2
gma00195 Photosynthesis 2
gma00010 Glycolysis / Gluconeogenesis 2
gma00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 6
vvi00710 Carbon fixation by Calvin cycle 5
vvi00195 Photosynthesis 3
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 5
ppo00710 Carbon fixation by Calvin cycle 4
ppo00195 Photosynthesis 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 3
ppo00710 Carbon fixation by Calvin cycle 2
ppo01230 Biosynthesis of amino acids 2
ppo00190 Oxidative phosphorylation 2
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr00190 Oxidative phosphorylation 2
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 10
sly00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 6
sly00190 Oxidative phosphorylation 3
sly01200 Carbon metabolism 3
sly00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00710 Carbon fixation by Calvin cycle 5
sot01200 Carbon metabolism 5
sot01230 Biosynthesis of amino acids 5
sot00195 Photosynthesis 5
sot00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta00195 Photosynthesis 4
nta00040 Pentose and glucuronate interconversions 3
nta00030 Pentose phosphate pathway 2
nta00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta00195 Photosynthesis 4
nta00040 Pentose and glucuronate interconversions 3
nta00030 Pentose phosphate pathway 2
nta00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta00195 Photosynthesis 4
nta00030 Pentose phosphate pathway 2
nta00040 Pentose and glucuronate interconversions 2
nta00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 9
osa00190 Oxidative phosphorylation 3
osa01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 8
zma00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 13
tae00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 10
tae00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 13
tae00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 5
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 5
cre01200 Carbon metabolism 5
cre00195 Photosynthesis 5
cre00190 Oxidative phosphorylation 3
cre00030 Pentose phosphate pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829359 103851204 106370141 106399213 102626417 100527009 109122511 7471598 7465390 11432459 109120519 101263124 102584644 107802241 107791170 107786267 4332431 100282566 123097873 123092569 123085474 123448996 8081476 100825720 5722943
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