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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   LCL1   LHY/CCA1-like 1 
 ath-u.5   LCL1   LHY/CCA1-like 1 
 ath-r.7   LCL1   LHY/CCA1-like 1 
 ath-m.9   LCL1   LHY/CCA1-like 1 
 ath-e.2   LCL1   LHY/CCA1-like 1 
 ath-m.4.bio   LCL1   LHY/CCA1-like 1 
 ath-m.4.hor   LCL1   LHY/CCA1-like 1 
 ath-m.4.str   LCL1   LHY/CCA1-like 1 
 ath-m.4.tis   LCL1   LHY/CCA1-like 1 

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Top 50 coexpressed genes to LCL1 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LCL1 (ath-m.4.lig coexpression data)

CoexMap"831766"


athLCL1 | Entrez gene ID : 831766      
Species ath bdi bra gma ppo sbi ghi sot nta cre tae zma mtr hvu vvi cit bna sly osa
Paralog 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042752 [list] [network] regulation of circadian rhythm  (59 genes)  IGI  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
Protein NP_001031823.1 [sequence] [blastp]
NP_001332134.1 [sequence] [blastp]
NP_001332135.1 [sequence] [blastp]
NP_568108.1 [sequence] [blastp]
NP_850756.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001031823.1)
nucl 10  (predict for NP_001332134.1)
nucl 10  (predict for NP_001332135.1)
nucl 10  (predict for NP_568108.1)
nucl 10  (predict for NP_850756.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001031823.1)
other 8  (predict for NP_001332134.1)
other 8  (predict for NP_001332135.1)
other 8  (predict for NP_568108.1)
other 8  (predict for NP_850756.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
LCL1
ath-u.5
for
LCL1
ath-r.7
for
LCL1
ath-m.9
for
LCL1
ath-e.2
for
LCL1
ath-m.4.bio
for
LCL1
ath-m.4.hor
for
LCL1
ath-m.4.str
for
LCL1
ath-m.4.tis
for
LCL1


Ortholog ID: 16822
Species ath bra bna bna
Symbol LCL1 LOC103855503 LOC106372608 LOC106450522
Function* LHY/CCA1-like 1 protein REVEILLE 4 protein REVEILLE 4-like protein REVEILLE 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
bna04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
bna00480 Glutathione metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831766 103855503 106372608 106450522
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