ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.lig	TRB2	Homeodomain-like/winged-helix DNA-binding family protein
ath-u.5	TRB2	Homeodomain-like/winged-helix DNA-binding family protein
ath-r.7	TRB2	Homeodomain-like/winged-helix DNA-binding family protein
ath-m.9	TRB2	Homeodomain-like/winged-helix DNA-binding family protein
ath-e.2	TRB2	Homeodomain-like/winged-helix DNA-binding family protein
ath-m.4.bio	TRB2	Homeodomain-like/winged-helix DNA-binding family protein
ath-m.4.hor	TRB2	Homeodomain-like/winged-helix DNA-binding family protein
ath-m.4.str	TRB2	Homeodomain-like/winged-helix DNA-binding family protein
ath-m.4.tis	TRB2	Homeodomain-like/winged-helix DNA-binding family protein
ath-u.5	AT1G54260	winged-helix DNA-binding transcription factor family protein
ath-u.5	AT1G72740	Homeodomain-like/winged-helix DNA-binding family protein
ath-u.5	TRB1	telomere repeat binding factor 1
bra-r.6	103831780	telomere repeat-binding factor 4
bra-r.6	103827702	telomere repeat-binding factor 3
bra-r.6	103835952	telomere repeat-binding factor 4
bna-r.1	106448104	telomere repeat-binding factor 3
bna-r.1	106451688	telomere repeat-binding factor 1-like
ghi-r.1	107913297	telomere repeat-binding factor 2
ghi-r.1	107908833	telomere repeat-binding factor 1
ghi-r.1	107906085	telomere repeat-binding factor 4
cit-r.1	102625292	telomere repeat-binding factor 2
cit-r.1	102620018	telomere repeat-binding factor 4
cit-r.1	102629981	telomere repeat-binding factor 1
gma-u.5	778165	telomere repeat-binding factor 2
gma-u.5	MYB55	MYB transcription factor
gma-u.5	MYB107	MYB transcription factor MYB107
vvi-u.5	100854718	telomere repeat-binding factor 1
vvi-u.5	100261713	telomere repeat-binding factor 1
vvi-u.5	104880293	proline-rich receptor-like protein kinase PERK10
ppo-u.5	7469640	telomere repeat-binding factor 1
ppo-u.5	18107693	telomere repeat-binding factor 4
ppo-u.5	7497744	telomere repeat-binding factor 2
mtr-u.5	25486339	telomere repeat-binding factor 1
mtr-u.5	25502915	telomere repeat-binding factor 1
sly-u.5	101248266	single myb histone 6
sly-u.5	101263623	telomere repeat-binding factor 4
sly-u.5	101261899	single myb histone 4
sot-r.1	102587249	single myb histone 6-like
sot-r.1	102588044	telomere repeat-binding factor 1-like
nta-r.1	107775054	single myb histone 6
nta-r.1	107784527	telomere repeat-binding factor 1
nta-r.1	107787141	telomere repeat-binding factor 4
osa-u.5	4324449	single myb histone 2
osa-u.5	4352780	single myb histone 6
osa-u.5	4327680	single myb histone 4
zma-u.5	100274000	putative MYB-domain histone H1 family protein
zma-u.5	542123	single myb histone 3
zma-u.5	542683	single myb histone 6
tae-r.2	123078852	single myb histone 4
tae-r.2	123078482	single myb histone 2
tae-r.2	123070391	single myb histone 4
hvu-r.1	123444236	single myb histone 4
hvu-r.1	123443794	single myb histone 2-like
sbi-r.1	8057250	single myb histone 6
sbi-r.1	8056578	single myb histone 5
sbi-r.1	8069770	single myb histone 4
bdi-r.1	100831004	single myb histone 6-like
bdi-r.1	100830626	single myb histone 2
bdi-r.1	100828330	single myb histone 5
cre-r.1	CHLRE_04g221200v5	uncharacterized protein

Top 50 coexpressed genes to TRB2 (ath-m.4.lig coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to TRB2 (ath-m.4.lig coexpression data)

CoexMap"836894"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006334 [list] [network] nucleosome assembly

(13 genes)

IEA

GO CC

GO:0000786 [list] [network] nucleosome	(8 genes)	IEA
GO:0000785 [list] [network] chromatin	(140 genes)	IDA
GO:0005730 [list] [network] nucleolus	(394 genes)	IDA
GO:0005634 [list] [network] nucleus	(10367 genes)	IDA ISM

GO MF

GO:0043047 [list] [network] single-stranded telomeric DNA binding	(5 genes)	IDA
GO:0003691 [list] [network] double-stranded telomeric DNA binding	(8 genes)	IDA
GO:0042162 [list] [network] telomeric DNA binding	(14 genes)	IDA
GO:0042803 [list] [network] protein homodimerization activity	(237 genes)	IPI
GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_201559.1 [sequence] [blastp]
NP_851286.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, mito 3, cyto_nucl 3	(predict for NP_201559.1)
nucl 4, mito 3, cyto_nucl 3	(predict for NP_851286.1)

Subcellular
localization
TargetP

other 8	(predict for NP_201559.1)
other 8	(predict for NP_851286.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.lig for TRB2	ath-u.5 for TRB2	ath-r.7 for TRB2	ath-m.9 for TRB2	ath-e.2 for TRB2	ath-m.4.bio for TRB2	ath-m.4.hor for TRB2	ath-m.4.str for TRB2	ath-m.4.tis for TRB2	ath-u.5 for AT1G54260	ath-u.5 for AT1G72740	ath-u.5 for TRB1	bra-r.6 for 103831780	bra-r.6 for 103827702	bra-r.6 for 103835952	bna-r.1 for 106448104	bna-r.1 for 106451688	ghi-r.1 for 107913297	ghi-r.1 for 107908833	ghi-r.1 for 107906085	cit-r.1 for 102625292	cit-r.1 for 102620018	cit-r.1 for 102629981	gma-u.5 for 778165	gma-u.5 for MYB55	gma-u.5 for MYB107	vvi-u.5 for 100854718	vvi-u.5 for 100261713	vvi-u.5 for 104880293	ppo-u.5 for 7469640	ppo-u.5 for 18107693	ppo-u.5 for 7497744	mtr-u.5 for 25486339	mtr-u.5 for 25502915	sly-u.5 for 101248266	sly-u.5 for 101263623	sly-u.5 for 101261899	sot-r.1 for 102587249	sot-r.1 for 102588044	nta-r.1 for 107775054	nta-r.1 for 107784527	nta-r.1 for 107787141	osa-u.5 for 4324449	osa-u.5 for 4352780	osa-u.5 for 4327680	zma-u.5 for 100274000	zma-u.5 for 542123	zma-u.5 for 542683	tae-r.2 for 123078852	tae-r.2 for 123078482	tae-r.2 for 123070391	hvu-r.1 for 123444236	hvu-r.1 for 123443794	sbi-r.1 for 8057250	sbi-r.1 for 8056578	sbi-r.1 for 8069770	bdi-r.1 for 100831004	bdi-r.1 for 100830626	bdi-r.1 for 100828330	cre-r.1 for CHLRE_04g221200v5

Ortholog

Ortholog ID: 463

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

TRB2

TRB3

MYB85

Function^*

Homeodomain-like/winged-helix DNA-binding family protein

telomere repeat binding factor 3

telomere repeat-binding factor 4