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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   SKIP16   SKP1/ASK-interacting protein 16 
 ath-u.5   SKIP16   SKP1/ASK-interacting protein 16 
 ath-r.7   SKIP16   SKP1/ASK-interacting protein 16 
 ath-m.9   SKIP16   SKP1/ASK-interacting protein 16 
 ath-e.2   SKIP16   SKP1/ASK-interacting protein 16 
 ath-m.4.bio   SKIP16   SKP1/ASK-interacting protein 16 
 ath-m.4.hor   SKIP16   SKP1/ASK-interacting protein 16 
 ath-m.4.str   SKIP16   SKP1/ASK-interacting protein 16 
 ath-m.4.tis   SKIP16   SKP1/ASK-interacting protein 16 
 bra-r.6   103836492   F-box protein SKIP16 
 bna-r.1   106365701   F-box protein SKIP16 
 bna-r.1   106440505   F-box protein SKIP16 
 ghi-r.1   107927494   F-box protein SKIP16 
 ghi-r.1   107938721   F-box protein SKIP16 
 cit-r.1   102630354   F-box protein SKIP16 
 gma-u.5   100809876   F-box protein SKIP16-like 
 gma-u.5   SKIP16   F-box protein SKIP16-like 
 vvi-u.5   100256107   F-box protein SKIP16 
 vvi-u.5   100261191   F-box protein SKIP16 
 ppo-u.5   18106888   F-box protein SKIP16 
 ppo-u.5   7491742   F-box protein SKIP16 
 mtr-u.5   11414458   F-box protein SKIP16 
 sly-u.5   101267814   F-box protein SKIP16 
 sot-r.1   102603288   F-box protein SKIP16 
 nta-r.1   107760641   F-box protein SKIP16 
 nta-r.1   107788525   F-box protein SKIP16 
 osa-u.5   4350241   F-box protein SKIP16 
 osa-u.5   4350244   F-box protein SKIP16 
 zma-u.5   100273585   F-box protein SKIP16 
 tae-r.2   123089986   F-box protein SKIP16 
 tae-r.2   123086800   F-box protein SKIP16 
 tae-r.2   123096664   F-box protein SKIP16 
 hvu-r.1   123450249   F-box protein SKIP16 
 sbi-r.1   8064383   F-box protein SKIP16 
 bdi-r.1   100838832   F-box protein SKIP16 
 cre-r.1   CHLRE_01g005900v5   uncharacterized protein 

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Top 50 coexpressed genes to SKIP16 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SKIP16 (ath-m.4.lig coexpression data)

CoexMap"837120"


athSKIP16 | Entrez gene ID : 837120      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 2 2 1 1 1 2 2 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0019005 [list] [network] SCF ubiquitin ligase complex  (41 genes)  IPI  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001320593.1 [sequence] [blastp]
NP_001320594.1 [sequence] [blastp]
NP_563759.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  E.R. 1,  cyto_pero 1,  E.R._plas 1  (predict for NP_001320593.1)
cyto 3,  E.R. 2,  cyto_nucl 2,  nucl 2,  E.R._plas 2  (predict for NP_001320594.1)
cyto 3,  E.R. 2,  E.R._plas 2,  plas 1,  nucl 1,  cyto_pero 1  (predict for NP_563759.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001320593.1)
other 9  (predict for NP_001320594.1)
other 9  (predict for NP_563759.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
SKIP16
ath-u.5
for
SKIP16
ath-r.7
for
SKIP16
ath-m.9
for
SKIP16
ath-e.2
for
SKIP16
ath-m.4.bio
for
SKIP16
ath-m.4.hor
for
SKIP16
ath-m.4.str
for
SKIP16
ath-m.4.tis
for
SKIP16
bra-r.6
for
103836492
bna-r.1
for
106365701
bna-r.1
for
106440505
ghi-r.1
for
107927494
ghi-r.1
for
107938721
cit-r.1
for
102630354
gma-u.5
for
100809876
gma-u.5
for
SKIP16
vvi-u.5
for
100256107
vvi-u.5
for
100261191
ppo-u.5
for
18106888
ppo-u.5
for
7491742
mtr-u.5
for
11414458
sly-u.5
for
101267814
sot-r.1
for
102603288
nta-r.1
for
107760641
nta-r.1
for
107788525
osa-u.5
for
4350241
osa-u.5
for
4350244
zma-u.5
for
100273585
tae-r.2
for
123089986
tae-r.2
for
123086800
tae-r.2
for
123096664
hvu-r.1
for
123450249
sbi-r.1
for
8064383
bdi-r.1
for
100838832
cre-r.1
for
CHLRE_01g005900v5


Ortholog ID: 7779
Species ath bra bna bna ghi ghi cit gma gma vvi vvi ppo ppo mtr sly sot nta nta osa osa zma tae tae tae hvu sbi bdi cre
Symbol SKIP16 LOC103836492 LOC106365701 LOC106440505 LOC107927494 LOC107938721 LOC102630354 LOC100809876 SKIP16 LOC100256107 LOC100261191 LOC18106888 LOC7491742 LOC11414458 LOC101267814 LOC102603288 LOC107760641 LOC107788525 LOC4350241 LOC4350244 LOC100273585 LOC123089986 LOC123086800 LOC123096664 LOC123450249 LOC8064383 LOC100838832 CHLRE_01g005900v5
Function* SKP1/ASK-interacting protein 16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16-like F-box protein SKIP16-like F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 F-box protein SKIP16 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00030 Pentose phosphate pathway 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 2
bna00270 Cysteine and methionine metabolism 2
bna00670 One carbon pool by folate 2
bna00999 Biosynthesis of various plant secondary metabolites 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 2
bna00670 One carbon pool by folate 2
bna00999 Biosynthesis of various plant secondary metabolites 2
bna01230 Biosynthesis of amino acids 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
ghi03040 Spliceosome 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
ghi03018 RNA degradation 2
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04517 IgSF CAM signaling 2
gma04518 Integrin signaling 2
gma00220 Arginine biosynthesis 2
gma00250 Alanine, aspartate and glutamate metabolism 2
gma00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 2
ppo04142 Lysosome 2
ppo04145 Phagosome 2
ppo04146 Peroxisome 2
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 2
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04145 Phagosome 3
nta00071 Fatty acid degradation 2
nta04144 Endocytosis 2
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04145 Phagosome 4
nta00071 Fatty acid degradation 2
nta00190 Oxidative phosphorylation 2
nta04130 SNARE interactions in vesicular transport 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
osa00053 Ascorbate and aldarate metabolism 2
osa00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00020 Citrate cycle (TCA cycle) 4
sbi00785 Lipoic acid metabolism 4
sbi01200 Carbon metabolism 4
sbi01210 2-Oxocarboxylic acid metabolism 4
sbi00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04146 Peroxisome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837120 103836492 106365701 106440505 107927494 107938721 102630354 100809876 100778108 100256107 100261191 18106888 7491742 11414458 101267814 102603288 107760641 107788525 4350241 4350244 100273585 123089986 123086800 123096664 123450249 8064383 100838832 5727661
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