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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   emb2004   RNI-like superfamily protein 
 ath-u.5   emb2004   RNI-like superfamily protein 
 ath-r.7   emb2004   RNI-like superfamily protein 
 ath-m.9   emb2004   RNI-like superfamily protein 
 ath-e.2   emb2004   RNI-like superfamily protein 
 ath-m.4.bio   emb2004   RNI-like superfamily protein 
 ath-m.4.hor   emb2004   RNI-like superfamily protein 
 ath-m.4.str   emb2004   RNI-like superfamily protein 
 ath-m.4.tis   emb2004   RNI-like superfamily protein 
 bra-r.6   103871830   NLR family CARD domain-containing protein 3 
 bra-r.6   103868090   NLR family CARD domain-containing protein 3 
 bna-r.1   106357913   NLR family CARD domain-containing protein 3 
 bna-r.1   106362419   NLR family CARD domain-containing protein 3 
 bna-r.1   106368303   NLR family CARD domain-containing protein 3 
 ghi-r.1   107957314   NLR family CARD domain-containing protein 3 
 ghi-r.1   107903697   NLR family CARD domain-containing protein 3 
 cit-r.1   102619610   uncharacterized LOC102619610 
 gma-u.5   100789448   NLR family CARD domain-containing protein 3 
 gma-u.5   100784693   protein NLRC3 
 vvi-u.5   100258814   uncharacterized LOC100258814 
 ppo-u.5   7473247   uncharacterized LOC7473247 
 mtr-u.5   11412180   NLR family CARD domain-containing protein 3 
 sly-u.5   101265540   uncharacterized LOC101265540 
 sot-r.1   102602530   protein NLRC3 
 nta-r.1   107790378   uncharacterized LOC107790378 
 nta-r.1   107818594   uncharacterized LOC107818594 
 osa-u.5   107275646   uncharacterized LOC107275646 
 zma-u.5   103637804   NLR family CARD domain-containing protein 3 
 tae-r.2   123156748   NLR family CARD domain-containing protein 3 
 tae-r.2   123165441   NLR family CARD domain-containing protein 3 
 hvu-r.1   123410723   NLR family CARD domain-containing protein 3 
 sbi-r.1   8065552   NLR family CARD domain-containing protein 3 
 bdi-r.1   100828348   NLR family CARD domain-containing protein 3 
 cre-r.1   CHLRE_06g302700v5   uncharacterized protein 

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Top 50 coexpressed genes to emb2004 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to emb2004 (ath-m.4.lig coexpression data)

CoexMap"837591"


athemb2004 | Entrez gene ID : 837591    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  NAS  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
Protein NP_563871.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_563871.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_563871.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
emb2004
ath-u.5
for
emb2004
ath-r.7
for
emb2004
ath-m.9
for
emb2004
ath-e.2
for
emb2004
ath-m.4.bio
for
emb2004
ath-m.4.hor
for
emb2004
ath-m.4.str
for
emb2004
ath-m.4.tis
for
emb2004
bra-r.6
for
103871830
bra-r.6
for
103868090
bna-r.1
for
106357913
bna-r.1
for
106362419
bna-r.1
for
106368303
ghi-r.1
for
107957314
ghi-r.1
for
107903697
cit-r.1
for
102619610
gma-u.5
for
100789448
gma-u.5
for
100784693
vvi-u.5
for
100258814
ppo-u.5
for
7473247
mtr-u.5
for
11412180
sly-u.5
for
101265540
sot-r.1
for
102602530
nta-r.1
for
107790378
nta-r.1
for
107818594
osa-u.5
for
107275646
zma-u.5
for
103637804
tae-r.2
for
123156748
tae-r.2
for
123165441
hvu-r.1
for
123410723
sbi-r.1
for
8065552
bdi-r.1
for
100828348
cre-r.1
for
CHLRE_06g302700v5


Ortholog ID: 8688
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol emb2004 LOC103871830 LOC103868090 LOC106362419 LOC106368303 LOC106453096 LOC107957314 LOC107903697 LOC102619610 LOC100789448 LOC100784693 LOC100258814 LOC7473247 LOC11412180 LOC101265540 LOC102602530 LOC107790378 LOC107818594 LOC107275646 LOC103637804 LOC123156748 LOC123165441 LOC123410723 LOC8065552 LOC100828348 CHLRE_06g302700v5
Function* RNI-like superfamily protein NLR family CARD domain-containing protein 3 NLR family CARD domain-containing protein 3 NLR family CARD domain-containing protein 3 NLR family CARD domain-containing protein 3 NLR family CARD domain-containing protein 3 NLR family CARD domain-containing protein 3 NLR family CARD domain-containing protein 3 uncharacterized LOC102619610 NLR family CARD domain-containing protein 3 protein NLRC3 uncharacterized LOC100258814 uncharacterized LOC7473247 NLR family CARD domain-containing protein 3 uncharacterized LOC101265540 protein NLRC3 uncharacterized LOC107790378 uncharacterized LOC107818594 uncharacterized LOC107275646 NLR family CARD domain-containing protein 3 NLR family CARD domain-containing protein 3 NLR family CARD domain-containing protein 3 NLR family CARD domain-containing protein 3 NLR family CARD domain-containing protein 3 NLR family CARD domain-containing protein 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03060 Protein export 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03060 Protein export 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 4
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 3
mtr00230 Purine metabolism 2
mtr00240 Pyrimidine metabolism 2
mtr01232 Nucleotide metabolism 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot00970 Aminoacyl-tRNA biosynthesis 3
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 4
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
zma04144 Endocytosis 2
zma01210 2-Oxocarboxylic acid metabolism 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
tae00450 Selenocompound metabolism 3
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837591 103871830 103868090 106362419 106368303 106453096 107957314 107903697 102619610 100789448 100784693 100258814 7473247 11412180 101265540 102602530 107790378 107818594 107275646 103637804 123156748 123165441 123410723 8065552 100828348 5716943
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