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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   CCMH   cytochrome c biogenesis protein family 
 ath-u.5   CCMH   cytochrome c biogenesis protein family 
 ath-r.7   CCMH   cytochrome c biogenesis protein family 
 ath-m.9   CCMH   cytochrome c biogenesis protein family 
 ath-e.2   CCMH   cytochrome c biogenesis protein family 
 ath-m.4.bio   CCMH   cytochrome c biogenesis protein family 
 ath-m.4.hor   CCMH   cytochrome c biogenesis protein family 
 ath-m.4.str   CCMH   cytochrome c biogenesis protein family 
 ath-m.4.tis   CCMH   cytochrome c biogenesis protein family 
 bra-r.6   103872313   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 bra-r.6   103836038   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 bna-r.1   106346680   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 bna-r.1   106379903   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 bna-r.1   106452103   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 ghi-r.1   107913900   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 ghi-r.1   107916608   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 ghi-r.1   107906151   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 cit-r.1   102607252   hypothetical protein 
 gma-u.5   100306221   uncharacterized LOC100306221 
 vvi-u.5   100254866   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 ppo-u.5   7478403   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 mtr-u.5   11440035   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 sly-u.5   101265523   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 sot-r.1   102593427   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 nta-r.1   107811126   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 nta-r.1   107801787   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 nta-r.1   107799541   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 osa-u.5   4329000   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 zma-u.5   100383068   uncharacterized LOC100383068 
 tae-r.2   123098851   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 tae-r.2   123105788   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 hvu-r.1   123443981   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 hvu-r.1   123449788   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 sbi-r.1   8080397   cytochrome c-type biogenesis CcmH-like mitochondrial protein 
 bdi-r.1   100840937   cytochrome c-type biogenesis CcmH-like mitochondrial protein 

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Top 50 coexpressed genes to CCMH (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CCMH (ath-m.4.lig coexpression data)

CoexMap"838089"


athCCMH | Entrez gene ID : 838089      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 1 1 1 1 1 1 3 1 1 2 2 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0017004 [list] [network] cytochrome complex assembly  (23 genes)  TAS  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO CC
GO:0005743 [list] [network] mitochondrial inner membrane  (49 genes)  IDA  
GO:0032991 [list] [network] protein-containing complex  (1548 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA ISM  
GO MF
GO:0016491 [list] [network] oxidoreductase activity  (809 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_563966.1 [sequence] [blastp]
NP_973834.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 1,  nucl 1  (predict for NP_563966.1)
cyto 7,  chlo 1,  nucl 1  (predict for NP_973834.1)
Subcellular
localization
TargetP
other 8  (predict for NP_563966.1)
other 8  (predict for NP_973834.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
CCMH
ath-u.5
for
CCMH
ath-r.7
for
CCMH
ath-m.9
for
CCMH
ath-e.2
for
CCMH
ath-m.4.bio
for
CCMH
ath-m.4.hor
for
CCMH
ath-m.4.str
for
CCMH
ath-m.4.tis
for
CCMH
bra-r.6
for
103872313
bra-r.6
for
103836038
bna-r.1
for
106346680
bna-r.1
for
106379903
bna-r.1
for
106452103
ghi-r.1
for
107913900
ghi-r.1
for
107916608
ghi-r.1
for
107906151
cit-r.1
for
102607252
gma-u.5
for
100306221
vvi-u.5
for
100254866
ppo-u.5
for
7478403
mtr-u.5
for
11440035
sly-u.5
for
101265523
sot-r.1
for
102593427
nta-r.1
for
107811126
nta-r.1
for
107801787
nta-r.1
for
107799541
osa-u.5
for
4329000
zma-u.5
for
100383068
tae-r.2
for
123098851
tae-r.2
for
123105788
hvu-r.1
for
123443981
hvu-r.1
for
123449788
sbi-r.1
for
8080397
bdi-r.1
for
100840937


Ortholog ID: 7034
Species ath bra bra bna bna bna ghi ghi ghi cit gma vvi ppo mtr sly sot nta nta nta osa zma tae tae hvu hvu sbi bdi
Symbol CCMH LOC103872313 LOC103836038 LOC106379903 LOC106452103 LOC106364277 LOC107916608 LOC107906151 LOC107897184 LOC102607252 LOC100306221 LOC100254866 LOC7478403 LOC11440035 LOC101265523 LOC102593427 LOC107811126 LOC107801787 LOC107799541 LOC4329000 LOC100383068 LOC123098851 LOC123093581 LOC123443981 LOC123449788 LOC8080397 LOC100840937
Function* cytochrome c biogenesis protein family cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein hypothetical protein uncharacterized LOC100306221 cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein uncharacterized LOC100383068 cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein cytochrome c-type biogenesis CcmH-like mitochondrial protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03430 Mismatch repair 2
ghi03460 Fanconi anemia pathway 2
ghi03020 RNA polymerase 2
ghi00061 Fatty acid biosynthesis 2
ghi00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma03008 Ribosome biogenesis in eukaryotes 3
gma03040 Spliceosome 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta04981 Folate transport and metabolism 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03008 Ribosome biogenesis in eukaryotes 2
tae04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03010 Ribosome 3
bdi03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838089 103872313 103836038 106379903 106452103 106364277 107916608 107906151 107897184 102607252 100306221 100254866 7478403 11440035 101265523 102593427 107811126 107801787 107799541 4329000 100383068 123098851 123093581 123443981 123449788 8080397 100840937
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