ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.lig	AT1G26620	T-box transcription factor, putative (DUF863)
ath-u.5	AT1G26620	T-box transcription factor, putative (DUF863)
ath-r.7	AT1G26620	T-box transcription factor, putative (DUF863)
ath-m.9	AT1G26620	T-box transcription factor, putative (DUF863)
ath-e.2	AT1G26620	T-box transcription factor, putative (DUF863)
ath-m.4.bio	AT1G26620	T-box transcription factor, putative (DUF863)
ath-m.4.hor	AT1G26620	T-box transcription factor, putative (DUF863)
ath-m.4.str	AT1G26620	T-box transcription factor, putative (DUF863)
ath-m.4.tis	AT1G26620	T-box transcription factor, putative (DUF863)
ath-u.5	AT1G13940	T-box transcription factor, putative (DUF863)
ath-u.5	AT1G69360	T-box transcription factor, putative (DUF863)
bra-r.6	103840628	uncharacterized LOC103840628
bra-r.6	103843014	uncharacterized LOC103843014
bra-r.6	103831332	uncharacterized LOC103831332
bna-r.1	BNAA09G29050D	uncharacterized BNAA09G29050D
bna-r.1	106354062	uncharacterized LOC106354062
ghi-r.1	107894203	uncharacterized LOC107894203
ghi-r.1	107903931	uncharacterized LOC107903931
ghi-r.1	107920012	uncharacterized LOC107920012
cit-r.1	102622680	uncharacterized LOC102622680
cit-r.1	102619816	uncharacterized LOC102619816
gma-u.5	102666610	uncharacterized LOC102666610
gma-u.5	102665797	uncharacterized LOC102665797
gma-u.5	100801474	uncharacterized LOC100801474
vvi-u.5	104879181	uncharacterized LOC104879181
vvi-u.5	104881703	uncharacterized LOC104881703
ppo-u.5	7467717	uncharacterized LOC7467717
ppo-u.5	7472618	uncharacterized LOC7472618
ppo-u.5	7481549	uncharacterized LOC7481549
mtr-u.5	11422165	uncharacterized LOC11422165
mtr-u.5	11443924	uncharacterized LOC11443924
sly-u.5	101267700	uncharacterized LOC101267700
sly-u.5	101264722	uncharacterized LOC101264722
sly-u.5	101251675	uncharacterized LOC101251675
sot-r.1	102605966	uncharacterized LOC102605966
sot-r.1	102587464	uncharacterized LOC102587464
sot-r.1	107057663	uncharacterized LOC107057663
nta-r.1	107784589	uncharacterized LOC107784589
nta-r.1	107768492	uncharacterized LOC107768492
nta-r.1	107764987	uncharacterized LOC107764987
osa-u.5	4334175	uncharacterized LOC4334175
zma-u.5	103625871	uncharacterized LOC103625871
zma-u.5	100194005	uncharacterized LOC100194005
tae-r.2	123105093	uncharacterized LOC123105093
tae-r.2	123113384	uncharacterized LOC123113384
tae-r.2	123113385	uncharacterized LOC123113385
hvu-r.1	123452326	uncharacterized LOC123452326
hvu-r.1	123452327	uncharacterized LOC123452327
sbi-r.1	8086212	uncharacterized LOC8086212
bdi-r.1	100838424	uncharacterized LOC100838424

Top 50 coexpressed genes to AT1G26620 (ath-m.4.lig coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G26620 (ath-m.4.lig coexpression data)

CoexMap"839202"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045892 [list] [network] negative regulation of DNA-templated transcription

(200 genes)

IDA

GO CC

GO:0000118 [list] [network] histone deacetylase complex	(44 genes)	IPI
GO:0005634 [list] [network] nucleus	(10367 genes)	IDA

GO MF

GO:0031491 [list] [network] nucleosome binding	(7 genes)	IDA
GO:0001217 [list] [network] DNA-binding transcription repressor activity	(23 genes)	IDA

Protein

NP_173984.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for NP_173984.1)

Subcellular
localization
TargetP

other 9

(predict for NP_173984.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.lig for AT1G26620	ath-u.5 for AT1G26620	ath-r.7 for AT1G26620	ath-m.9 for AT1G26620	ath-e.2 for AT1G26620	ath-m.4.bio for AT1G26620	ath-m.4.hor for AT1G26620	ath-m.4.str for AT1G26620	ath-m.4.tis for AT1G26620	ath-u.5 for AT1G13940	ath-u.5 for AT1G69360	bra-r.6 for 103840628	bra-r.6 for 103843014	bra-r.6 for 103831332	bna-r.1 for BNAA09G29050D	bna-r.1 for 106354062	ghi-r.1 for 107894203	ghi-r.1 for 107903931	ghi-r.1 for 107920012	cit-r.1 for 102622680	cit-r.1 for 102619816	gma-u.5 for 102666610	gma-u.5 for 102665797	gma-u.5 for 100801474	vvi-u.5 for 104879181	vvi-u.5 for 104881703	ppo-u.5 for 7467717	ppo-u.5 for 7472618	ppo-u.5 for 7481549	mtr-u.5 for 11422165	mtr-u.5 for 11443924	sly-u.5 for 101267700	sly-u.5 for 101264722	sly-u.5 for 101251675	sot-r.1 for 102605966	sot-r.1 for 102587464	sot-r.1 for 107057663	nta-r.1 for 107784589	nta-r.1 for 107768492	nta-r.1 for 107764987	osa-u.5 for 4334175	zma-u.5 for 103625871	zma-u.5 for 100194005	tae-r.2 for 123105093	tae-r.2 for 123113384	tae-r.2 for 123113385	hvu-r.1 for 123452326	hvu-r.1 for 123452327	sbi-r.1 for 8086212	bdi-r.1 for 100838424

Ortholog

Ortholog ID: 2246

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

T-box transcription factor, putative (DUF863)

uncharacterized LOC103840628

uncharacterized LOC103843014

uncharacterized LOC103831332

uncharacterized LOC106382340

uncharacterized LOC106401549

uncharacterized LOC106425613

uncharacterized LOC107920012

uncharacterized LOC107920257

uncharacterized LOC107960329

uncharacterized LOC102622680

uncharacterized LOC102619816

uncharacterized LOC102666610

uncharacterized LOC102665797

uncharacterized LOC100799644

uncharacterized LOC104879181

uncharacterized LOC104881703

uncharacterized LOC7467717

uncharacterized LOC7481549

uncharacterized LOC18101456

uncharacterized LOC11422165

uncharacterized LOC11443924

uncharacterized LOC101267700

uncharacterized LOC101264722

uncharacterized LOC101251675

uncharacterized LOC102605966

uncharacterized LOC102587464

uncharacterized LOC107057663

uncharacterized LOC107784589

uncharacterized LOC107762455

uncharacterized LOC107826229

uncharacterized LOC4334175

uncharacterized LOC103625871

uncharacterized LOC100194005

uncharacterized LOC123105093

uncharacterized LOC123113384

uncharacterized LOC123105092

uncharacterized LOC123452326

uncharacterized LOC123452327

uncharacterized LOC8086212

uncharacterized LOC100838424

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	3
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03022	Basal transcription factors	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2
bra00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	3
ghi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03015	mRNA surveillance pathway	2
cit03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03030	DNA replication	2
nta03420	Nucleotide excision repair	2
nta03430	Mismatch repair	2
nta03440	Homologous recombination	2
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	6
nta04626	Plant-pathogen interaction	2
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2
nta04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03030	DNA replication	2
nta03420	Nucleotide excision repair	2
nta03430	Mismatch repair	2
nta03440	Homologous recombination	2
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00562	Inositol phosphate metabolism	2
osa04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	6
tae00562	Inositol phosphate metabolism	3
tae04070	Phosphatidylinositol signaling system	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	6
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

839202

837954

843268

103840628

103843014

103831332

106382340

106401549

106425613

107920012

107920257

107960329

102622680

102619816

102666610

102665797

100799644

104879181

104881703

7467717

7481549

18101456

11422165

11443924

101267700

101264722

101251675

102605966

102587464

107057663

107784589

107762455

107826229

4334175

103625871

100194005

123105093

123113384

123105092

123452326

123452327

8086212

100838424

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	2	3	2	3	2	3	2	3	3	3	1	2	3	2	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G26620 (ath-m.4.lig coexpression data)

Top 50 enrichment test to AT1G26620 (ath-m.4.lig coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**