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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   AT1G29040   50S ribosomal protein L34 
 ath-u.5   AT1G29040   50S ribosomal protein L34 
 ath-r.7   AT1G29040   50S ribosomal protein L34 
 ath-m.9   AT1G29040   50S ribosomal protein L34 
 ath-e.2   AT1G29040   50S ribosomal protein L34 
 ath-m.4.bio   AT1G29040   50S ribosomal protein L34 
 ath-m.4.hor   AT1G29040   50S ribosomal protein L34 
 ath-m.4.str   AT1G29040   50S ribosomal protein L34 
 ath-m.4.tis   AT1G29040   50S ribosomal protein L34 
 bra-r.6   103828992   uncharacterized LOC103828992 
 bna-r.1   106356189   uncharacterized LOC106356189 
 bna-r.1   BNAC07G10170D   uncharacterized BNAC07G10170D 
 ghi-r.1   107962263   uncharacterized LOC107962263 
 ghi-r.1   107901731   uncharacterized LOC107901731 
 cit-r.1   102617329   uncharacterized LOC102617329 
 gma-u.5   100527162   uncharacterized LOC100527162 
 vvi-u.5   100253185   uncharacterized LOC100253185 
 ppo-u.5   7455918   uncharacterized LOC7455918 
 mtr-u.5   11443980   uncharacterized LOC11443980 
 mtr-u.5   11443463   uncharacterized LOC11443463 
 sly-u.5   101245381   uncharacterized LOC101245381 
 sot-r.1   102578302   uncharacterized LOC102578302 
 nta-r.1   107813640   uncharacterized LOC107813640 
 nta-r.1   107786033   uncharacterized LOC107786033 
 osa-u.5   4325323   uncharacterized LOC4325323 
 zma-u.5   100502516   uncharacterized LOC100502516 
 tae-r.2   123070110   uncharacterized LOC123070110 
 tae-r.2   123078556   uncharacterized LOC123078556 
 tae-r.2   123061470   uncharacterized LOC123061470 
 hvu-r.1   123443870   uncharacterized LOC123443870 
 sbi-r.1   8084822   uncharacterized LOC8084822 
 bdi-r.1   100824994   uncharacterized LOC100824994 

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Top 50 coexpressed genes to AT1G29040 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G29040 (ath-m.4.lig coexpression data)

CoexMap"839778"


athAT1G29040 | Entrez gene ID : 839778      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 2 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO MF
Protein NP_001031105.1 [sequence] [blastp]
NP_001319103.1 [sequence] [blastp]
NP_001320973.1 [sequence] [blastp]
NP_564317.1 [sequence] [blastp]
NP_849726.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 3  (predict for NP_001031105.1)
chlo 6,  mito 3  (predict for NP_001319103.1)
chlo 9  (predict for NP_001320973.1)
chlo 9  (predict for NP_564317.1)
chlo 9  (predict for NP_849726.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001031105.1)
chlo 9  (predict for NP_001319103.1)
chlo 9  (predict for NP_001320973.1)
chlo 9  (predict for NP_564317.1)
chlo 9  (predict for NP_849726.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
AT1G29040
ath-u.5
for
AT1G29040
ath-r.7
for
AT1G29040
ath-m.9
for
AT1G29040
ath-e.2
for
AT1G29040
ath-m.4.bio
for
AT1G29040
ath-m.4.hor
for
AT1G29040
ath-m.4.str
for
AT1G29040
ath-m.4.tis
for
AT1G29040
bra-r.6
for
103828992
bna-r.1
for
106356189
bna-r.1
for
BNAC07G10170D
ghi-r.1
for
107962263
ghi-r.1
for
107901731
cit-r.1
for
102617329
gma-u.5
for
100527162
vvi-u.5
for
100253185
ppo-u.5
for
7455918
mtr-u.5
for
11443980
mtr-u.5
for
11443463
sly-u.5
for
101245381
sot-r.1
for
102578302
nta-r.1
for
107813640
nta-r.1
for
107786033
osa-u.5
for
4325323
zma-u.5
for
100502516
tae-r.2
for
123070110
tae-r.2
for
123078556
tae-r.2
for
123061470
hvu-r.1
for
123443870
sbi-r.1
for
8084822
bdi-r.1
for
100824994


Ortholog ID: 9239
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol AT1G29040 LOC103828992 LOC106356189 BNAC07G10170D LOC107962263 LOC107901731 LOC102617329 LOC100527162 LOC100253185 LOC7455918 LOC11443980 LOC11443463 LOC101245381 LOC102578302 LOC107813640 LOC107786033 LOC4325323 LOC100502516 LOC123070110 LOC123078556 LOC123061470 LOC123443870 LOC8084822 LOC100824994
Function* 50S ribosomal protein L34 uncharacterized LOC103828992 uncharacterized LOC106356189 uncharacterized BNAC07G10170D uncharacterized LOC107962263 uncharacterized LOC107901731 uncharacterized LOC102617329 uncharacterized LOC100527162 uncharacterized LOC100253185 uncharacterized LOC7455918 uncharacterized LOC11443980 uncharacterized LOC11443463 uncharacterized LOC101245381 uncharacterized LOC102578302 uncharacterized LOC107813640 uncharacterized LOC107786033 uncharacterized LOC4325323 uncharacterized LOC100502516 uncharacterized LOC123070110 uncharacterized LOC123078556 uncharacterized LOC123061470 uncharacterized LOC123443870 uncharacterized LOC8084822 uncharacterized LOC100824994
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00510 N-Glycan biosynthesis 2
ath00513 Various types of N-glycan biosynthesis 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
bna03040 Spliceosome 4
bna00260 Glycine, serine and threonine metabolism 3
bna00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 4
bna00260 Glycine, serine and threonine metabolism 3
bna00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00030 Pentose phosphate pathway 2
ghi00670 One carbon pool by folate 2
ghi01200 Carbon metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi03050 Proteasome 2
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 6
cit03010 Ribosome 2
cit00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi00330 Arginine and proline metabolism 2
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 3
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 4
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 4
sot03083 Polycomb repressive complex 3
sot04120 Ubiquitin mediated proteolysis 3
sot00190 Oxidative phosphorylation 2
sot04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta04142 Lysosome 4
nta04145 Phagosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 8
zma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 5
tae00270 Cysteine and methionine metabolism 4
tae01200 Carbon metabolism 4
tae00470 D-Amino acid metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 4
tae00270 Cysteine and methionine metabolism 4
tae00470 D-Amino acid metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 5
tae00230 Purine metabolism 4
tae00470 D-Amino acid metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
hvu04145 Phagosome 2
hvu01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 5
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839778 103828992 106356189 106435520 107962263 107901731 102617329 100527162 100253185 7455918 11443980 11443463 101245381 102578302 107813640 107786033 4325323 100502516 123070110 123078556 123061470 123443870 8084822 100824994
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