ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.lig	PHV	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
ath-u.5	PHV	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
ath-r.7	PHV	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
ath-m.9	PHV	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
ath-e.2	PHV	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
ath-m.4.bio	PHV	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
ath-m.4.hor	PHV	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
ath-m.4.str	PHV	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
ath-m.4.tis	PHV	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
ath-u.5	PHB	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
ath-u.5	HB-8	homeobox-leucine zipper protein ATHB-8
ath-u.5	REV	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
bra-r.6	103851488	homeobox-leucine zipper protein REVOLUTA
bra-r.6	103832807	homeobox-leucine zipper protein ATHB-15
bra-r.6	103834507	homeobox-leucine zipper protein ATHB-8
bna-r.1	125601444	homeobox-leucine zipper protein ATHB-15
bna-r.1	125609345	homeobox-leucine zipper protein ATHB-14-like
bna-r.1	125581333	homeobox-leucine zipper protein REVOLUTA-like
ghi-r.1	107943494	homeobox-leucine zipper protein ATHB-8
ghi-r.1	107940121	homeobox-leucine zipper protein REVOLUTA
ghi-r.1	107936073	homeobox-leucine zipper protein REVOLUTA
cit-r.1	102630043	homeobox-leucine zipper protein ATHB-8
cit-r.1	102607597	homeobox-leucine zipper protein ATHB-14
cit-r.1	102624720	homeobox-leucine zipper protein REVOLUTA
gma-u.5	100800165	homeobox-leucine zipper protein ATHB-15-like
gma-u.5	100807637	homeobox-leucine zipper protein ATHB-14-like
gma-u.5	100813804	homeobox-leucine zipper protein REVOLUTA-like
vvi-u.5	100261558	homeobox-leucine zipper protein REVOLUTA
vvi-u.5	100260057	homeobox-leucine zipper protein ATHB-15
vvi-u.5	100254822	homeobox-leucine zipper protein HOX32
ppo-u.5	18098199	homeobox-leucine zipper protein REVOLUTA
ppo-u.5	18101974	homeobox-leucine zipper protein REVOLUTA
ppo-u.5	18103292	homeobox-leucine zipper protein ATHB-14
mtr-u.5	11412427	homeobox-leucine zipper protein ATHB-14
mtr-u.5	11428604	homeobox-leucine zipper protein ATHB-15
mtr-u.5	11428867	homeobox-leucine zipper protein ATHB-8
sly-u.5	101261876	homeobox-leucine zipper protein ATHB-14
sly-u.5	101259910	homeobox-leucine zipper protein REVOLUTA
sly-u.5	101257548	homeobox-leucine zipper protein ATHB-15
sot-r.1	102601513	homeobox-leucine zipper protein ATHB-14
sot-r.1	102579068	homeobox-leucine zipper protein ATHB-14-like
sot-r.1	102588628	homeobox-leucine zipper protein REVOLUTA
nta-r.1	107794244	homeobox-leucine zipper protein REVOLUTA-like
nta-r.1	107808135	homeobox-leucine zipper protein ATHB-15
nta-r.1	107760551	homeobox-leucine zipper protein ATHB-15
osa-u.5	4348919	homeobox-leucine zipper protein HOX9-like
osa-u.5	4327348	homeobox-leucine zipper protein HOX29-like
osa-u.5	4331345	homeobox-leucine zipper protein HOX10-like
zma-u.5	100274567	uncharacterized LOC100274567
zma-u.5	542515	rolled leaf 1
zma-u.5	103634943	homeobox-leucine zipper protein HOX29
tae-r.2	123104919	homeobox-leucine zipper protein HOX32
tae-r.2	123102191	homeobox-leucine zipper protein HOX33
tae-r.2	123099203	homeobox-leucine zipper protein HOX10
hvu-r.1	123452119	homeobox-leucine zipper protein HOX32
hvu-r.1	123450050	homeobox-leucine zipper protein HOX10
hvu-r.1	123443113	homeobox-leucine zipper protein HOX29-like
sbi-r.1	8070476	homeobox-leucine zipper protein HOX9
sbi-r.1	8062217	homeobox-leucine zipper protein HOX32
sbi-r.1	8059507	homeobox-leucine zipper protein HOX10
bdi-r.1	100837244	homeobox-leucine zipper protein HOX29
bdi-r.1	100838127	homeobox-leucine zipper protein HOX33
bdi-r.1	100844190	homeobox-leucine zipper protein HOX9

Top 50 coexpressed genes to PHV (ath-m.4.lig coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to PHV (ath-m.4.lig coexpression data)

CoexMap"839928"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0009855 [list] [network] determination of bilateral symmetry	(8 genes)	IMP
GO:0080060 [list] [network] integument development	(12 genes)	IGI
GO:0010072 [list] [network] primary shoot apical meristem specification	(15 genes)	IMP
GO:0009944 [list] [network] polarity specification of adaxial/abaxial axis	(23 genes)	IMP
GO:0009880 [list] [network] embryonic pattern specification	(26 genes)	IGI
GO:0009943 [list] [network] adaxial/abaxial axis specification	(28 genes)	IMP
GO:0010014 [list] [network] meristem initiation	(36 genes)	IMP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0008289 [list] [network] lipid binding	(245 genes)	IEA
GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0003677 [list] [network] DNA binding	(1274 genes)	ISS
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_174337.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 2, cyto 2, nucl_plas 2

(predict for NP_174337.1)

Subcellular
localization
TargetP

other 9

(predict for NP_174337.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.lig for PHV	ath-u.5 for PHV	ath-r.7 for PHV	ath-m.9 for PHV	ath-e.2 for PHV	ath-m.4.bio for PHV	ath-m.4.hor for PHV	ath-m.4.str for PHV	ath-m.4.tis for PHV	ath-u.5 for PHB	ath-u.5 for HB-8	ath-u.5 for REV	bra-r.6 for 103851488	bra-r.6 for 103832807	bra-r.6 for 103834507	bna-r.1 for 125601444	bna-r.1 for 125609345	bna-r.1 for 125581333	ghi-r.1 for 107943494	ghi-r.1 for 107940121	ghi-r.1 for 107936073	cit-r.1 for 102630043	cit-r.1 for 102607597	cit-r.1 for 102624720	gma-u.5 for 100800165	gma-u.5 for 100807637	gma-u.5 for 100813804	vvi-u.5 for 100261558	vvi-u.5 for 100260057	vvi-u.5 for 100254822	ppo-u.5 for 18098199	ppo-u.5 for 18101974	ppo-u.5 for 18103292	mtr-u.5 for 11412427	mtr-u.5 for 11428604	mtr-u.5 for 11428867	sly-u.5 for 101261876	sly-u.5 for 101259910	sly-u.5 for 101257548	sot-r.1 for 102601513	sot-r.1 for 102579068	sot-r.1 for 102588628	nta-r.1 for 107794244	nta-r.1 for 107808135	nta-r.1 for 107760551	osa-u.5 for 4348919	osa-u.5 for 4327348	osa-u.5 for 4331345	zma-u.5 for 100274567	zma-u.5 for 542515	zma-u.5 for 103634943	tae-r.2 for 123104919	tae-r.2 for 123102191	tae-r.2 for 123099203	hvu-r.1 for 123452119	hvu-r.1 for 123450050	hvu-r.1 for 123443113	sbi-r.1 for 8070476	sbi-r.1 for 8062217	sbi-r.1 for 8059507	bdi-r.1 for 100837244	bdi-r.1 for 100838127	bdi-r.1 for 100844190

Ortholog

Ortholog ID: 411

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

PHB

REV

ATHB-15

Function^*

Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein