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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   AT1G31240   Bromodomain transcription factor 
 ath-m.9   AT1G31240   Bromodomain transcription factor 
 ath-m.4.bio   AT1G31240   Bromodomain transcription factor 
 ath-m.4.hor   AT1G31240   Bromodomain transcription factor 
 ath-m.4.str   AT1G31240   Bromodomain transcription factor 
 ath-m.4.tis   AT1G31240   Bromodomain transcription factor 
 bra-r.6   103840259   transcription initiation factor TFIID subunit 8 
 ghi-r.1   107937506   transcription initiation factor TFIID subunit 8 
 ghi-r.1   107916450   transcription initiation factor TFIID subunit 8 
 cit-r.1   107175575   transcription initiation factor TFIID subunit 8 
 gma-u.5   102667709   transcription initiation factor TFIID subunit 8 
 gma-u.5   102667916   uncharacterized LOC102667916 
 vvi-u.5   104879053   transcription initiation factor TFIID subunit 8 
 mtr-u.5   11429047   uncharacterized LOC11429047 
 sly-u.5   104645911   transcription initiation factor TFIID subunit 8 
 sot-r.1   102579059   uncharacterized LOC102579059 
 nta-r.1   107788944   transcription initiation factor TFIID subunit 8-like 
 nta-r.1   107802102   transcription initiation factor TFIID subunit 8-like 
 osa-u.5   9270043   transcription initiation factor TFIID subunit 8 
 zma-u.5   100277408   uncharacterized LOC100277408 

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Top 50 coexpressed genes to AT1G31240 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G31240 (ath-m.4.lig coexpression data)

CoexMap"840012"


athAT1G31240 | Entrez gene ID : 840012      
Species ath bra ghi cit gma vvi mtr sly sot nta osa zma cre ppo hvu bna tae bdi sbi
Paralog 6 1 2 1 2 1 1 1 1 2 1 1 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03022 [list] [network] Basal transcription factors (55 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0046982 [list] [network] protein heterodimerization activity  (86 genes)  IEA  
Protein NP_174409.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  mito 1,  chlo 1,  plas 1,  cyto_mito 1  (predict for NP_174409.1)
Subcellular
localization
TargetP
other 4,  mito 4  (predict for NP_174409.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
AT1G31240
ath-m.9
for
AT1G31240
ath-m.4.bio
for
AT1G31240
ath-m.4.hor
for
AT1G31240
ath-m.4.str
for
AT1G31240
ath-m.4.tis
for
AT1G31240
bra-r.6
for
103840259
ghi-r.1
for
107937506
ghi-r.1
for
107916450
cit-r.1
for
107175575
gma-u.5
for
102667709
gma-u.5
for
102667916
vvi-u.5
for
104879053
mtr-u.5
for
11429047
sly-u.5
for
104645911
sot-r.1
for
102579059
nta-r.1
for
107788944
nta-r.1
for
107802102
osa-u.5
for
9270043
zma-u.5
for
100277408


Ortholog ID: 12492
Species bra ghi ghi cit gma gma vvi mtr sly sot nta nta osa zma
Symbol LOC103840259 LOC107937506 LOC107916450 LOC107175575 LOC102667709 LOC102667916 LOC104879053 LOC11429047 LOC104645911 LOC102579059 LOC107788944 LOC107802102 LOC9270043 LOC100277408
Function* transcription initiation factor TFIID subunit 8 transcription initiation factor TFIID subunit 8 transcription initiation factor TFIID subunit 8 transcription initiation factor TFIID subunit 8 transcription initiation factor TFIID subunit 8 uncharacterized LOC102667916 transcription initiation factor TFIID subunit 8 uncharacterized LOC11429047 transcription initiation factor TFIID subunit 8 uncharacterized LOC102579059 transcription initiation factor TFIID subunit 8-like transcription initiation factor TFIID subunit 8-like transcription initiation factor TFIID subunit 8 uncharacterized LOC100277408
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00564 Glycerophospholipid metabolism 3
bra00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma03022 Basal transcription factors 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
nta04016 MAPK signaling pathway - plant 2
nta03022 Basal transcription factors 2
nta04517 IgSF CAM signaling 2
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
nta04016 MAPK signaling pathway - plant 2
nta03022 Basal transcription factors 2
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103840259 107937506 107916450 107175575 102667709 102667916 104879053 11429047 104645911 102579059 107788944 107802102 9270043 100277408
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