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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   AT1G56020   serine/arginine repetitive matrix-like protein 
 ath-u.5   AT1G56020   serine/arginine repetitive matrix-like protein 
 ath-r.7   AT1G56020   serine/arginine repetitive matrix-like protein 
 ath-m.9   AT1G56020   serine/arginine repetitive matrix-like protein 
 ath-e.2   AT1G56020   serine/arginine repetitive matrix-like protein 
 ath-m.4.bio   AT1G56020   serine/arginine repetitive matrix-like protein 
 ath-m.4.hor   AT1G56020   serine/arginine repetitive matrix-like protein 
 ath-m.4.str   AT1G56020   serine/arginine repetitive matrix-like protein 
 ath-m.4.tis   AT1G56020   serine/arginine repetitive matrix-like protein 
 ath-u.5   AT3G12970   serine/arginine repetitive matrix-like protein 
 ath-u.5   AT1G79060   TPRXL 
 bra-r.6   103832383   uncharacterized LOC103832383 
 bna-r.1   125594919   uncharacterized serine-rich protein C215.13-like 
 bna-r.1   125575635   uncharacterized LOC125575635 
 bna-r.1   106354762   uncharacterized serine-rich protein C215.13 
 ghi-r.1   121217199   uncharacterized LOC121217199 
 ghi-r.1   121213743   transcription activator MSS11 
 ghi-r.1   121203751   transcription activator MSS11 
 cit-r.1   102625622   hypothetical protein 
 gma-u.5   100784462   uncharacterized LOC100784462 
 gma-u.5   100814066   putative protein TPRXL 
 vvi-u.5   100259352   uncharacterized LOC100259352 
 ppo-u.5   7462574   uncharacterized LOC7462574 
 ppo-u.5   7480443   uncharacterized LOC7480443 
 mtr-u.5   25487028   uncharacterized LOC25487028 
 sly-u.5   101260742   uncharacterized LOC101260742 
 sly-u.5   101244039   uncharacterized LOC101244039 
 sot-r.1   102584717   uncharacterized LOC102584717 
 sot-r.1   102586725   uncharacterized LOC102586725 
 nta-r.1   107783922   uncharacterized LOC107783922 
 nta-r.1   107831458   uncharacterized LOC107831458 
 nta-r.1   107785456   uncharacterized LOC107785456 
 osa-u.5   4341820   endochitinase A 
 osa-u.5   4328410   uncharacterized LOC4328410 
 zma-u.5   103654890   flocculation protein FLO11 
 zma-u.5   100304398   uncharacterized LOC100304398 
 zma-u.5   100304367   uncharacterized LOC100304367 
 tae-r.2   123169147   suppressor protein SRP40 
 tae-r.2   123130435   protein VASP homolog 
 hvu-r.1   123408648   suppressor protein SRP40-like 
 hvu-r.1   123401842   proline-rich protein 36-like 
 sbi-r.1   8061606   SH3 domain-containing protein C23A1.17 
 sbi-r.1   8074688   zinc finger CCCH domain-containing protein 18 
 bdi-r.1   100844580   actin cytoskeleton-regulatory complex protein pan1 
 bdi-r.1   104585544   trinucleotide repeat-containing gene 18 protein 

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Top 50 coexpressed genes to AT1G56020 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G56020 (ath-m.4.lig coexpression data)

CoexMap"842053"


athAT1G56020 | Entrez gene ID : 842053      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 1 3 3 1 2 1 2 1 2 2 3 2 3 2 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_175998.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 3,  cyto_nucl 3,  nucl_plas 3  (predict for NP_175998.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_175998.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
AT1G56020
ath-u.5
for
AT1G56020
ath-r.7
for
AT1G56020
ath-m.9
for
AT1G56020
ath-e.2
for
AT1G56020
ath-m.4.bio
for
AT1G56020
ath-m.4.hor
for
AT1G56020
ath-m.4.str
for
AT1G56020
ath-m.4.tis
for
AT1G56020
ath-u.5
for
AT3G12970
ath-u.5
for
AT1G79060
bra-r.6
for
103832383
bna-r.1
for
125594919
bna-r.1
for
125575635
bna-r.1
for
106354762
ghi-r.1
for
121217199
ghi-r.1
for
121213743
ghi-r.1
for
121203751
cit-r.1
for
102625622
gma-u.5
for
100784462
gma-u.5
for
100814066
vvi-u.5
for
100259352
ppo-u.5
for
7462574
ppo-u.5
for
7480443
mtr-u.5
for
25487028
sly-u.5
for
101260742
sly-u.5
for
101244039
sot-r.1
for
102584717
sot-r.1
for
102586725
nta-r.1
for
107783922
nta-r.1
for
107831458
nta-r.1
for
107785456
osa-u.5
for
4341820
osa-u.5
for
4328410
zma-u.5
for
103654890
zma-u.5
for
100304398
zma-u.5
for
100304367
tae-r.2
for
123169147
tae-r.2
for
123130435
hvu-r.1
for
123408648
hvu-r.1
for
123401842
sbi-r.1
for
8061606
sbi-r.1
for
8074688
bdi-r.1
for
100844580
bdi-r.1
for
104585544


Ortholog ID: 2726
Species ath ath ath bra bra bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol AT1G56020 AT3G12970 AT1G79060 LOC103832383 LOC103871002 LOC125594919 LOC121213743 LOC121203751 LOC107909162 LOC102625622 LOC100784462 LOC100814066 LOC100259352 LOC7462574 LOC7480443 LOC25487028 LOC101260742 LOC101244039 LOC102584717 LOC102586725 LOC107783922 LOC107831458 LOC107785456 LOC4341820 LOC4328410 LOC103654890 LOC100304398 LOC100274801 LOC123130435 LOC123143982 LOC123408648 LOC123401842 LOC8061606 LOC8074688 LOC100844580 LOC104585544
Function* serine/arginine repetitive matrix-like protein serine/arginine repetitive matrix-like protein TPRXL uncharacterized LOC103832383 uncharacterized LOC103871002 uncharacterized serine-rich protein C215.13-like transcription activator MSS11 transcription activator MSS11 uncharacterized LOC107909162 hypothetical protein uncharacterized LOC100784462 putative protein TPRXL uncharacterized LOC100259352 uncharacterized LOC7462574 uncharacterized LOC7480443 uncharacterized LOC25487028 uncharacterized LOC101260742 uncharacterized LOC101244039 uncharacterized LOC102584717 uncharacterized LOC102586725 uncharacterized LOC107783922 uncharacterized LOC107831458 uncharacterized LOC107785456 endochitinase A uncharacterized LOC4328410 flocculation protein FLO11 uncharacterized LOC100304398 uncharacterized LOC100274801 protein VASP homolog protein VASP homolog suppressor protein SRP40-like proline-rich protein 36-like SH3 domain-containing protein C23A1.17 zinc finger CCCH domain-containing protein 18 actin cytoskeleton-regulatory complex protein pan1 trinucleotide repeat-containing gene 18 protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
bdi01232 Nucleotide metabolism 2
bdi03030 DNA replication 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842053 820483 844247 103832383 103871002 125594919 121213743 121203751 107909162 102625622 100784462 100814066 100259352 7462574 7480443 25487028 101260742 101244039 102584717 102586725 107783922 107831458 107785456 4341820 4328410 103654890 100304398 100274801 123130435 123143982 123408648 123401842 8061606 8074688 100844580 104585544
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