ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.str	RAP2.7	uncharacterized protein
ath-u.5	RAP2.7	uncharacterized protein
ath-r.7	RAP2.7	uncharacterized protein
ath-m.9	RAP2.7	uncharacterized protein
ath-e.2	RAP2.7	uncharacterized protein
ath-m.4.bio	RAP2.7	uncharacterized protein
ath-m.4.hor	RAP2.7	uncharacterized protein
ath-m.4.lig	RAP2.7	uncharacterized protein
ath-m.4.tis	RAP2.7	uncharacterized protein
ath-u.5	TOE2	target of early activation tagged (EAT) 2
ath-u.5	TOE3	target of early activation tagged (EAT) 3
ath-u.5	AP2	Integrase-type DNA-binding superfamily protein
bra-r.6	103829752	ethylene-responsive transcription factor RAP2-7
bra-r.6	103845425	AP2-like ethylene-responsive transcription factor TOE2
bra-r.6	103829531	AP2-like ethylene-responsive transcription factor TOE3
bna-r.1	106437467	ethylene-responsive transcription factor RAP2-7
bna-r.1	106438341	ethylene-responsive transcription factor RAP2-7-like
bna-r.1	106439870	AP2-like ethylene-responsive transcription factor SMZ
ghi-r.1	107916610	floral homeotic protein APETALA 2
ghi-r.1	121214048	APETALA2-like protein 3
ghi-r.1	107945402	floral homeotic protein APETALA 2
cit-r.1	102606994	ethylene-responsive transcription factor RAP2-7
cit-r.1	102621126	floral homeotic protein APETALA 2-like
cit-r.1	102621401	APETALA2-like protein 2
gma-u.5	100777102	ethylene-responsive transcription factor RAP2-7
gma-u.5	100788303	ethylene-responsive transcription factor RAP2-7
gma-u.5	100786333	floral homeotic protein APETALA 2
vvi-u.5	AP2	transcription factor APETALA2
vvi-u.5	100263240	AP2-like ethylene-responsive transcription factor TOE3
ppo-u.5	7469774	APETALA2-like protein 3
ppo-u.5	7462600	floral homeotic protein APETALA 2
ppo-u.5	7465291	APETALA2-like protein 3
mtr-u.5	11406478	ethylene-responsive transcription factor RAP2-7
mtr-u.5	11417561	AP2-like ethylene-responsive transcription factor TOE3
mtr-u.5	11407832	floral homeotic protein APETALA 2
sly-u.5	AP2b	APETALA2-like protein AP2b
sly-u.5	AP2d	APETALA2-like protein AP2d
sly-u.5	AP2a	APETALA2a
sot-r.1	102589826	AP2-like ethylene-responsive transcription factor TOE3
sot-r.1	102605336	ethylene-responsive transcription factor RAP2-7-like
sot-r.1	102582568	floral homeotic protein APETALA 2
nta-r.1	107819773	ethylene-responsive transcription factor RAP2-7
nta-r.1	107764494	floral homeotic protein APETALA 2
nta-r.1	107778909	AP2-like ethylene-responsive transcription factor TOE3
osa-u.5	9271266	ethylene-responsive transcription factor RAP2-7
osa-u.5	9269072	AP2-like ethylene-responsive transcription factor TOE3
osa-u.5	4342787	APETALA2-like protein 3
zma-u.5	103629196	AP2-like ethylene-responsive transcription factor TOE3
zma-u.5	100381947	uncharacterized LOC100381947
zma-u.5	100280414	uncharacterized LOC100280414
tae-r.2	123047120	APETALA2-like protein 5
tae-r.2	123054929	APETALA2-like protein 5
tae-r.2	123123462	APETALA2-like protein 2
hvu-r.1	123428148	APETALA2-like protein 5
hvu-r.1	123403691	APETALA2-like protein 1
hvu-r.1	123409793	APETALA2-like protein 4
sbi-r.1	8068151	ethylene-responsive transcription factor RAP2-7
sbi-r.1	8079577	AP2-like ethylene-responsive transcription factor TOE3
sbi-r.1	8078470	floral homeotic protein APETALA 2
bdi-r.1	100839861	floral homeotic protein APETALA 2
bdi-r.1	100834763	AP2-like ethylene-responsive transcription factor TOE3
bdi-r.1	100821738	floral homeotic protein APETALA 2
cre-r.1	CHLRE_08g383000v5	uncharacterized protein
cre-r.1	CHLRE_01g009575v5	uncharacterized protein
cre-r.1	CHLRE_08g385350v5	uncharacterized protein

Top 50 coexpressed genes to RAP2.7 (ath-m.4.str coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to RAP2.7 (ath-m.4.str coexpression data)

CoexMap"817403"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045824 [list] [network] negative regulation of innate immune response	(24 genes)	IGI
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem	(186 genes)	IMP
GO:0010629 [list] [network] negative regulation of gene expression	(323 genes)	IGI
GO:1905392 [list] [network] plant organ morphogenesis	(480 genes)	IMP
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1618 genes)	IEA TAS

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

IC ISM

GO MF

GO:0001222 [list] [network] transcription corepressor binding	(13 genes)	IPI
GO:0043565 [list] [network] sequence-specific DNA binding	(875 genes)	IDA IPI
GO:0003677 [list] [network] DNA binding	(1274 genes)	TAS
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	IEA ISS TAS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_001189625.1 [sequence] [blastp]
NP_001318304.1 [sequence] [blastp]
NP_001323945.1 [sequence] [blastp]
NP_001323946.1 [sequence] [blastp]
NP_001323947.1 [sequence] [blastp]
NP_565674.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for NP_001189625.1)
nucl 8, chlo 1	(predict for NP_001318304.1)
nucl 8, chlo 1	(predict for NP_001323945.1)
nucl 6, pero 2, cyto 1, extr 1	(predict for NP_001323946.1)
nucl 8, chlo 1	(predict for NP_001323947.1)
nucl 10	(predict for NP_565674.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001189625.1)
other 8	(predict for NP_001318304.1)
other 8	(predict for NP_001323945.1)
scret 7, other 4	(predict for NP_001323946.1)
other 8	(predict for NP_001323947.1)
other 8	(predict for NP_565674.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.str for RAP2.7	ath-u.5 for RAP2.7	ath-r.7 for RAP2.7	ath-m.9 for RAP2.7	ath-e.2 for RAP2.7	ath-m.4.bio for RAP2.7	ath-m.4.hor for RAP2.7	ath-m.4.lig for RAP2.7	ath-m.4.tis for RAP2.7	ath-u.5 for TOE2	ath-u.5 for TOE3	ath-u.5 for AP2	bra-r.6 for 103829752	bra-r.6 for 103845425	bra-r.6 for 103829531	bna-r.1 for 106437467	bna-r.1 for 106438341	bna-r.1 for 106439870	ghi-r.1 for 107916610	ghi-r.1 for 121214048	ghi-r.1 for 107945402	cit-r.1 for 102606994	cit-r.1 for 102621126	cit-r.1 for 102621401	gma-u.5 for 100777102	gma-u.5 for 100788303	gma-u.5 for 100786333	vvi-u.5 for AP2	vvi-u.5 for 100263240	ppo-u.5 for 7469774	ppo-u.5 for 7462600	ppo-u.5 for 7465291	mtr-u.5 for 11406478	mtr-u.5 for 11417561	mtr-u.5 for 11407832	sly-u.5 for AP2b	sly-u.5 for AP2d	sly-u.5 for AP2a	sot-r.1 for 102589826	sot-r.1 for 102605336	sot-r.1 for 102582568	nta-r.1 for 107819773	nta-r.1 for 107764494	nta-r.1 for 107778909	osa-u.5 for 9271266	osa-u.5 for 9269072	osa-u.5 for 4342787	zma-u.5 for 103629196	zma-u.5 for 100381947	zma-u.5 for 100280414	tae-r.2 for 123047120	tae-r.2 for 123054929	tae-r.2 for 123123462	hvu-r.1 for 123428148	hvu-r.1 for 123403691	hvu-r.1 for 123409793	sbi-r.1 for 8068151	sbi-r.1 for 8079577	sbi-r.1 for 8078470	bdi-r.1 for 100839861	bdi-r.1 for 100834763	bdi-r.1 for 100821738	cre-r.1 for CHLRE_08g383000v5	cre-r.1 for CHLRE_01g009575v5	cre-r.1 for CHLRE_08g385350v5

Ortholog

Ortholog ID: 395

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

TOE2

SMZ

SNZ

AP2

AP2e

AP2c

Function^*

target of early activation tagged (EAT) 2

Integrase-type DNA-binding superfamily protein

AP2-like ethylene-responsive transcription factor TOE2

AP2-like ethylene-responsive transcription factor TOE3

AP2-like ethylene-responsive transcription factor TOE2

floral homeotic protein APETALA 2-like

floral homeotic protein APETALA 2

AP2-like ethylene-responsive transcription factor TOE3

floral homeotic protein APETALA 2

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

AP2-like ethylene-responsive transcription factor TOE3

ethylene-responsive transcription factor RAP2-7

APETALA2-like protein 3

transcription factor APETALA2

ethylene-responsive transcription factor RAP2-7

APETALA2-like protein 3

ethylene-responsive transcription factor RAP2-7

AP2-like ethylene-responsive transcription factor TOE3

floral homeotic protein APETALA 2

APETALA2-like protein AP2e

APETALA2-like protein AP2c

ethylene-responsive transcription factor RAP2-7-like

floral homeotic protein APETALA 2

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

AP2-like ethylene-responsive transcription factor TOE3

APETALA2-like protein 3

uncharacterized LOC100280414

sister of indeterminate spikelet 1

glossy15

APETALA2-like protein 2

APETALA2-like protein 1

APETALA2-like protein 5

APETALA2-like protein 4

APETALA2-like protein 2

ethylene-responsive transcription factor RAP2-7

floral homeotic protein APETALA 2

AP2/ERF and B3 domain-containing transcription factor ARF14-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00030	Pentose phosphate pathway	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00920	Sulfur metabolism	9
ghi01320	Sulfur cycle	7
ghi00230	Purine metabolism	4
ghi00261	Monobactam biosynthesis	4
ghi00450	Selenocompound metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00010	Glycolysis / Gluconeogenesis	2
cit00071	Fatty acid degradation	2
cit00350	Tyrosine metabolism	2
cit00620	Pyruvate metabolism	2
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00640	Propanoate metabolism	2
cit01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00592	alpha-Linolenic acid metabolism	5
cit04146	Peroxisome	3
cit00071	Fatty acid degradation	2
cit01040	Biosynthesis of unsaturated fatty acids	2
cit01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	2
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	4
sly00908	Zeatin biosynthesis	3
sly00996	Biosynthesis of various alkaloids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00195	Photosynthesis	2
sot03010	Ribosome	2
sot00785	Lipoic acid metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	4
zma00500	Starch and sucrose metabolism	2
zma01200	Carbon metabolism	2
zma01210	2-Oxocarboxylic acid metabolism	2
zma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre02010	ABC transporters	2

Expression

Expression pattern

Entrez Gene ID^*

836134

824664

818510

103845425

103829531

103851522

125594129

106423299

106366778

107931690

107959062

107913226

102606994

102622542

102627474

100788303

100797238

100808212

100268051

100246815

7465291

7489618

18100239

11406478

11417561

11407832

100736535

100736534

101259280

102605336

102582568

102579807

107764494

107803429

107810888

9269072

4342787

100280414

100271892

732805

123123462

543013

123428148

123409793

123453013

8068151

8068364

8057377

100839861

100831490

100825522

5719829

5725844

5725812

The preparation time of this page was 0.3 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	3	3	3	2	3	3	3	3	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to RAP2.7 (ath-m.4.str coexpression data)

Top 50 enrichment test to RAP2.7 (ath-m.4.str coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**