Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   AT2G41980   Protein with RING/U-box and TRAF-like domain 
 ath-u.5   AT2G41980   Protein with RING/U-box and TRAF-like domain 
 ath-r.7   AT2G41980   Protein with RING/U-box and TRAF-like domain 
 ath-m.9   AT2G41980   Protein with RING/U-box and TRAF-like domain 
 ath-e.2   AT2G41980   Protein with RING/U-box and TRAF-like domain 
 ath-m.4.bio   AT2G41980   Protein with RING/U-box and TRAF-like domain 
 ath-m.4.hor   AT2G41980   Protein with RING/U-box and TRAF-like domain 
 ath-m.4.lig   AT2G41980   Protein with RING/U-box and TRAF-like domain 
 ath-m.4.tis   AT2G41980   Protein with RING/U-box and TRAF-like domain 
 ath-u.5   SINAT2   uncharacterized protein 
 ath-u.5   AT3G61790   Protein with RING/U-box and TRAF-like domain 
 ath-u.5   AT4G27880   Protein with RING/U-box and TRAF-like domain 
 bra-r.6   103830327   E3 ubiquitin-protein ligase SINAT3 
 bra-r.6   103867677   E3 ubiquitin-protein ligase SINAT4 
 bra-r.6   103865920   putative E3 ubiquitin-protein ligase SINAT1 
 bna-r.1   111215125   putative E3 ubiquitin-protein ligase SINAT1 
 bna-r.1   125585150   E3 ubiquitin-protein ligase SINAT2-like 
 bna-r.1   125585149   E3 ubiquitin-protein ligase SINAT2-like 
 ghi-r.1   107916315   E3 ubiquitin-protein ligase DIS1 
 ghi-r.1   107921233   E3 ubiquitin-protein ligase SINAT2 
 ghi-r.1   107923566   E3 ubiquitin-protein ligase SINAT5 
 cit-r.1   127898595   E3 ubiquitin-protein ligase SINAT3 
 cit-r.1   102616953   E3 ubiquitin-protein ligase SINAT2 
 cit-r.1   102619672   E3 ubiquitin-protein ligase SINAT2 
 gma-u.5   100813966   E3 ubiquitin-protein ligase SINAT2-like 
 gma-u.5   100782764   E3 ubiquitin-protein ligase SINAT3 
 gma-u.5   100792687   E3 ubiquitin-protein ligase SINAT3 
 vvi-u.5   100252009   E3 ubiquitin-protein ligase SINAT5 
 vvi-u.5   100267231   E3 ubiquitin-protein ligase SINAT2 
 vvi-u.5   100244678   E3 ubiquitin-protein ligase DIS1 
 ppo-u.5   7455750   E3 ubiquitin-protein ligase SINAT2 
 ppo-u.5   7496400   E3 ubiquitin-protein ligase SINAT4 
 mtr-u.5   11444084   E3 ubiquitin-protein ligase DIS1 
 mtr-u.5   11418493   E3 ubiquitin-protein ligase SINAT2 
 mtr-u.5   11418807   E3 ubiquitin-protein ligase DIS1 
 sly-u.5   101246723   E3 ubiquitin ligase SINA3 
 sly-u.5   SlSINA5   E3 ubiquitin ligase SINA5 
 sly-u.5   SINA4   E3 ubiquitin ligase SINA4 
 sot-r.1   102599941   E3 ubiquitin-protein ligase SINAT5-like 
 sot-r.1   102601918   E3 ubiquitin-protein ligase SINAT5-like 
 sot-r.1   102584453   E3 ubiquitin-protein ligase SINAT5-like 
 nta-r.1   107802688   E3 ubiquitin-protein ligase SINAT3-like 
 nta-r.1   107761452   E3 ubiquitin-protein ligase SINAT5 
 nta-r.1   107773987   E3 ubiquitin-protein ligase SINAT2 
 osa-u.5   4338181   E3 ubiquitin-protein ligase SINAT3 
 osa-u.5   4344172   E3 ubiquitin-protein ligase DIS1-like 
 osa-u.5   4329066   E3 ubiquitin-protein ligase SINAT5 
 zma-u.5   100192741   putative seven in absentia domain family protein 
 zma-u.5   100170243   uncharacterized LOC100170243 
 zma-u.5   100170242   uncharacterized LOC100170242 
 tae-r.2   123060825   E3 ubiquitin-protein ligase SINAT5 
 tae-r.2   123051734   E3 ubiquitin-protein ligase DIS1 
 tae-r.2   123043860   E3 ubiquitin-protein ligase DIS1 
 hvu-r.1   123407757   E3 ubiquitin-protein ligase SINAT5-like 
 hvu-r.1   123428647   E3 ubiquitin-protein ligase SINAT5-like 
 hvu-r.1   123424892   E3 ubiquitin-protein ligase DIS1 
 sbi-r.1   8073139   E3 ubiquitin-protein ligase SINAT5 
 sbi-r.1   8058290   E3 ubiquitin-protein ligase SINAT5 
 sbi-r.1   8080816   E3 ubiquitin-protein ligase SINAT3 
 bdi-r.1   100826252   E3 ubiquitin-protein ligase SINAT5 
 bdi-r.1   100827553   E3 ubiquitin-protein ligase DIS1 
 bdi-r.1   100832893   E3 ubiquitin-protein ligase DIS1 

close


Top 50 coexpressed genes to AT2G41980 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to AT2G41980 (ath-m.4.str coexpression data)

CoexMap"818798"


athAT2G41980 | Entrez gene ID : 818798      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 3 3 3 3 3 2 3 3 3 3 3 3 3 3 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (162 genes)
GO BP
GO:2000785 [list] [network] regulation of autophagosome assembly  (4 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA IPI  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_181729.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  chlo 2,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_181729.1)
Subcellular
localization
TargetP
other 8  (predict for NP_181729.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
AT2G41980
ath-u.5
for
AT2G41980
ath-r.7
for
AT2G41980
ath-m.9
for
AT2G41980
ath-e.2
for
AT2G41980
ath-m.4.bio
for
AT2G41980
ath-m.4.hor
for
AT2G41980
ath-m.4.lig
for
AT2G41980
ath-m.4.tis
for
AT2G41980
ath-u.5
for
SINAT2
ath-u.5
for
AT3G61790
ath-u.5
for
AT4G27880
bra-r.6
for
103830327
bra-r.6
for
103867677
bra-r.6
for
103865920
bna-r.1
for
111215125
bna-r.1
for
125585150
bna-r.1
for
125585149
ghi-r.1
for
107916315
ghi-r.1
for
107921233
ghi-r.1
for
107923566
cit-r.1
for
127898595
cit-r.1
for
102616953
cit-r.1
for
102619672
gma-u.5
for
100813966
gma-u.5
for
100782764
gma-u.5
for
100792687
vvi-u.5
for
100252009
vvi-u.5
for
100267231
vvi-u.5
for
100244678
ppo-u.5
for
7455750
ppo-u.5
for
7496400
mtr-u.5
for
11444084
mtr-u.5
for
11418493
mtr-u.5
for
11418807
sly-u.5
for
101246723
sly-u.5
for
SlSINA5
sly-u.5
for
SINA4
sot-r.1
for
102599941
sot-r.1
for
102601918
sot-r.1
for
102584453
nta-r.1
for
107802688
nta-r.1
for
107761452
nta-r.1
for
107773987
osa-u.5
for
4338181
osa-u.5
for
4344172
osa-u.5
for
4329066
zma-u.5
for
100192741
zma-u.5
for
100170243
zma-u.5
for
100170242
tae-r.2
for
123060825
tae-r.2
for
123051734
tae-r.2
for
123043860
hvu-r.1
for
123407757
hvu-r.1
for
123428647
hvu-r.1
for
123424892
sbi-r.1
for
8073139
sbi-r.1
for
8058290
sbi-r.1
for
8080816
bdi-r.1
for
100826252
bdi-r.1
for
100827553
bdi-r.1
for
100832893


Ortholog ID: 342
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi
Symbol AT2G41980 AT3G61790 AT5G53360 LOC103830327 LOC103867677 LOC103862812 LOC111215125 LOC106428173 LOC106388271 LOC107916315 LOC107916308 LOC107940377 LOC102619672 LOC102623798 LOC102624862 LOC100792687 LOC100810573 LOC100500061 LOC100252009 LOC100233085 LOC100233084 LOC7455750 LOC7486772 LOC25500674 LOC25499735 LOC25483549 LOC101246723 SlSINA1 LOC101264159 LOC102599941 LOC102602007 LOC102602506 LOC107773987 LOC107784733 LOC107794971 LOC4338181 LOC4329066 LOC4327774 LOC100170243 LOC100170242 LOC100170241 LOC123043860 LOC123077898 LOC123165457 LOC123428647 LOC123424892 LOC123443282 LOC8073139 LOC8058290 LOC8080816 LOC100826252 LOC100832893 LOC100833057
Function* Protein with RING/U-box and TRAF-like domain Protein with RING/U-box and TRAF-like domain TRAF-like superfamily protein E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase SINAT4 E3 ubiquitin-protein ligase SINAT3 putative E3 ubiquitin-protein ligase SINAT1 putative E3 ubiquitin-protein ligase SINAT1 putative E3 ubiquitin-protein ligase SINAT1 E3 ubiquitin-protein ligase DIS1 E3 ubiquitin-protein ligase SINAT2 E3 ubiquitin-protein ligase DIS1 E3 ubiquitin-protein ligase SINAT2 E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase DIS1-like E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase SINAT3-like E3 ubiquitin-protein ligase SINAT2 E3 ubiquitin-protein ligase SINAT5 SINA2p SINA1p E3 ubiquitin-protein ligase SINAT2 E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase SINAT5 E3 ubiquitin-protein ligase SINAT2 E3 ubiquitin ligase SINA3 E3 ubiquitin ligase SINA1 E3 ubiquitin ligase SINA6 E3 ubiquitin-protein ligase SINAT5-like E3 ubiquitin-protein ligase SINAT5-like E3 ubiquitin-protein ligase SINAT3-like E3 ubiquitin-protein ligase SINAT2 E3 ubiquitin-protein ligase SINAT5 E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase SINAT5 E3 ubiquitin-protein ligase SINAT5 uncharacterized LOC100170243 uncharacterized LOC100170242 uncharacterized LOC100170241 E3 ubiquitin-protein ligase DIS1 E3 ubiquitin-protein ligase SINAT5 E3 ubiquitin-protein ligase SINAT5 E3 ubiquitin-protein ligase SINAT5-like E3 ubiquitin-protein ligase DIS1 E3 ubiquitin-protein ligase SINAT5-like E3 ubiquitin-protein ligase SINAT5 E3 ubiquitin-protein ligase SINAT5 E3 ubiquitin-protein ligase SINAT3 E3 ubiquitin-protein ligase SINAT5 E3 ubiquitin-protein ligase DIS1 E3 ubiquitin-protein ligase SINAT5
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna00280 Valine, leucine and isoleucine degradation 2
bna00640 Propanoate metabolism 2
bna00785 Lipoic acid metabolism 2
bna01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna00220 Arginine biosynthesis 2
bna00230 Purine metabolism 2
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 3
bna00220 Arginine biosynthesis 2
bna00230 Purine metabolism 2
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00770 Pantothenate and CoA biosynthesis 2
gma01240 Biosynthesis of cofactors 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 2
vvi04142 Lysosome 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03083 Polycomb repressive complex 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 5
sly04016 MAPK signaling pathway - plant 3
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 3
sly04145 Phagosome 2
sly04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00920 Sulfur metabolism 4
sot01320 Sulfur cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00480 Glutathione metabolism 4
sot04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 5
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 4
nta04075 Plant hormone signal transduction 2
nta04120 Ubiquitin mediated proteolysis 2
nta00310 Lysine degradation 2
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 4
nta00061 Fatty acid biosynthesis 2
nta00280 Valine, leucine and isoleucine degradation 2
nta01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03015 mRNA surveillance pathway 2
osa04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma04712 Circadian rhythm - plant 2
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 3
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 8
tae03083 Polycomb repressive complex 5
tae04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi04814 Motor proteins 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818798 825352 835417 103830327 103867677 103862812 111215125 106428173 106388271 107916315 107916308 107940377 102619672 102623798 102624862 100792687 100810573 100500061 100252009 100233085 100233084 7455750 7486772 25500674 25499735 25483549 101246723 101263446 101264159 102599941 102602007 102602506 107773987 107784733 107794971 4338181 4329066 4327774 100170243 100170242 100170241 123043860 123077898 123165457 123428647 123424892 123443282 8073139 8058290 8080816 100826252 100832893 100833057
The preparation time of this page was 0.2 [sec].