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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   AT3G18840   LOW protein: PPR containing-like protein 
 ath-m.9   AT3G18840   LOW protein: PPR containing-like protein 
 ath-m.4.bio   AT3G18840   LOW protein: PPR containing-like protein 
 ath-m.4.hor   AT3G18840   LOW protein: PPR containing-like protein 
 ath-m.4.lig   AT3G18840   LOW protein: PPR containing-like protein 
 ath-m.4.tis   AT3G18840   LOW protein: PPR containing-like protein 
 bra-r.6   103869519   putative pentatricopeptide repeat-containing protein At3g18840 
 bna-r.1   106451925   putative pentatricopeptide repeat-containing protein At3g18840 
 bna-r.1   106446843   putative pentatricopeptide repeat-containing protein At3g18840 
 bna-r.1   125608962   putative pentatricopeptide repeat-containing protein At3g18840 
 ghi-r.1   107945168   putative pentatricopeptide repeat-containing protein At3g18840 
 ghi-r.1   107898763   putative pentatricopeptide repeat-containing protein At3g18840 
 ppo-u.5   7464044   putative pentatricopeptide repeat-containing protein At3g18840 
 sly-u.5   101243649   pentatricopeptide repeat-containing protein 
 nta-r.1   107795971   putative pentatricopeptide repeat-containing protein At3g18840 
 nta-r.1   107802291   putative pentatricopeptide repeat-containing protein At3g18840 

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Top 50 coexpressed genes to AT3G18840 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G18840 (ath-m.4.str coexpression data)

CoexMap"821417"


athAT3G18840 | Entrez gene ID : 821417      
Species ath bra bna ghi ppo sly nta cre vvi hvu mtr tae bdi osa gma zma cit sot sbi
Paralog 6 1 3 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (230 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1764 genes)  IEA  
Protein NP_001078182.2 [sequence] [blastp]
NP_001325455.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  chlo_mito 4,  mito 1,  cyto 1,  nucl 1,  cysk 1,  cysk_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001078182.2)
chlo 5,  chlo_mito 4,  mito 1,  cyto 1,  nucl 1,  cysk 1,  cysk_nucl 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001325455.1)
Subcellular
localization
TargetP
chlo 2  (predict for NP_001078182.2)
chlo 2  (predict for NP_001325455.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
AT3G18840
ath-m.9
for
AT3G18840
ath-m.4.bio
for
AT3G18840
ath-m.4.hor
for
AT3G18840
ath-m.4.lig
for
AT3G18840
ath-m.4.tis
for
AT3G18840
bra-r.6
for
103869519
bna-r.1
for
106451925
bna-r.1
for
106446843
bna-r.1
for
125608962
ghi-r.1
for
107945168
ghi-r.1
for
107898763
ppo-u.5
for
7464044
sly-u.5
for
101243649
nta-r.1
for
107795971
nta-r.1
for
107802291


Ortholog ID: 13165
Species bra bna bna bna ghi ghi ppo sly nta nta
Symbol LOC103869519 LOC106451925 LOC106446843 LOC125608962 LOC107945168 LOC107898763 LOC7464044 LOC101243649 LOC107795971 LOC107802291
Function* putative pentatricopeptide repeat-containing protein At3g18840 putative pentatricopeptide repeat-containing protein At3g18840 putative pentatricopeptide repeat-containing protein At3g18840 putative pentatricopeptide repeat-containing protein At3g18840 putative pentatricopeptide repeat-containing protein At3g18840 putative pentatricopeptide repeat-containing protein At3g18840 putative pentatricopeptide repeat-containing protein At3g18840 pentatricopeptide repeat-containing protein putative pentatricopeptide repeat-containing protein At3g18840 putative pentatricopeptide repeat-containing protein At3g18840
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00564 Glycerophospholipid metabolism 2
bna00565 Ether lipid metabolism 2
bna00590 Arachidonic acid metabolism 2
bna00591 Linoleic acid metabolism 2
bna00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00564 Glycerophospholipid metabolism 2
bna00565 Ether lipid metabolism 2
bna00590 Arachidonic acid metabolism 2
bna00591 Linoleic acid metabolism 2
bna00592 alpha-Linolenic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103869519 106451925 106446843 125608962 107945168 107898763 7464044 101243649 107795971 107802291
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