ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.str	AT3G19540	glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)
ath-u.5	AT3G19540	glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)
ath-r.7	AT3G19540	glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)
ath-m.9	AT3G19540	glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)
ath-e.2	AT3G19540	glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)
ath-m.4.bio	AT3G19540	glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)
ath-m.4.hor	AT3G19540	glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)
ath-m.4.lig	AT3G19540	glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)
ath-m.4.tis	AT3G19540	glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)
ath-u.5	AT1G49840	glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)
bra-r.6	103832914	uncharacterized LOC103832914
bra-r.6	103837206	uncharacterized LOC103837206
bra-r.6	103869445	uncharacterized LOC103869445
bna-r.1	125608874	uncharacterized LOC125608874
bna-r.1	106377209	uncharacterized LOC106377209
bna-r.1	106397236	uncharacterized LOC106397236
ghi-r.1	107918526	uncharacterized LOC107918526
ghi-r.1	107898791	uncharacterized LOC107898791
ghi-r.1	107894310	uncharacterized LOC107894310
cit-r.1	102618172	uncharacterized LOC102618172
cit-r.1	102615116	uncharacterized LOC102615116
gma-u.5	100813272	uncharacterized LOC100813272
gma-u.5	100813032	uncharacterized LOC100813032
gma-u.5	100800721	uncharacterized LOC100800721
vvi-u.5	100257657	uncharacterized LOC100257657
vvi-u.5	100252320	uncharacterized LOC100252320
ppo-u.5	7469614	uncharacterized LOC7469614
ppo-u.5	18104811	uncharacterized LOC18104811
ppo-u.5	7465058	uncharacterized LOC7465058
mtr-u.5	25485360	uncharacterized LOC25485360
mtr-u.5	25489930	uncharacterized LOC25489930
mtr-u.5	11420386	uncharacterized LOC11420386
sly-u.5	101246097	uncharacterized LOC101246097
sly-u.5	101265729	uncharacterized LOC101265729
sot-r.1	102578171	uncharacterized LOC102578171
sot-r.1	102594434	uncharacterized LOC102594434
nta-r.1	107805791	uncharacterized LOC107805791
nta-r.1	107814595	uncharacterized LOC107814595
nta-r.1	107780803	uncharacterized LOC107780803
osa-u.5	4352639	uncharacterized LOC4352639
osa-u.5	4343777	uncharacterized LOC4343777
osa-u.5	4333415	uncharacterized LOC4333415
zma-u.5	103626058	uncharacterized LOC103626058
zma-u.5	100277866	uncharacterized LOC100277866
zma-u.5	103640485	uncharacterized LOC103640485
tae-r.2	123044354	uncharacterized LOC123044354
tae-r.2	123091126	uncharacterized LOC123091126
tae-r.2	123086850	uncharacterized LOC123086850
hvu-r.1	123425477	uncharacterized LOC123425477
hvu-r.1	123447781	uncharacterized LOC123447781
hvu-r.1	123395714	uncharacterized LOC123395714
sbi-r.1	8062523	uncharacterized LOC8062523
sbi-r.1	8063225	uncharacterized LOC8063225
sbi-r.1	8078986	uncharacterized LOC8078986
bdi-r.1	100828848	uncharacterized LOC100828848
bdi-r.1	100828062	uncharacterized LOC100828062
bdi-r.1	100833659	uncharacterized LOC100833659

Top 50 coexpressed genes to AT3G19540 (ath-m.4.str coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G19540 (ath-m.4.str coexpression data)

CoexMap"821490"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005739 [list] [network] mitochondrion

(4244 genes)

ISM

GO MF

Protein

NP_566642.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 3, plas 1, extr 1, vacu 1, pero 1

(predict for NP_566642.1)

Subcellular
localization
TargetP

chlo 9, mito 4

(predict for NP_566642.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.str for AT3G19540	ath-u.5 for AT3G19540	ath-r.7 for AT3G19540	ath-m.9 for AT3G19540	ath-e.2 for AT3G19540	ath-m.4.bio for AT3G19540	ath-m.4.hor for AT3G19540	ath-m.4.lig for AT3G19540	ath-m.4.tis for AT3G19540	ath-u.5 for AT1G49840	bra-r.6 for 103832914	bra-r.6 for 103837206	bra-r.6 for 103869445	bna-r.1 for 125608874	bna-r.1 for 106377209	bna-r.1 for 106397236	ghi-r.1 for 107918526	ghi-r.1 for 107898791	ghi-r.1 for 107894310	cit-r.1 for 102618172	cit-r.1 for 102615116	gma-u.5 for 100813272	gma-u.5 for 100813032	gma-u.5 for 100800721	vvi-u.5 for 100257657	vvi-u.5 for 100252320	ppo-u.5 for 7469614	ppo-u.5 for 18104811	ppo-u.5 for 7465058	mtr-u.5 for 25485360	mtr-u.5 for 25489930	mtr-u.5 for 11420386	sly-u.5 for 101246097	sly-u.5 for 101265729	sot-r.1 for 102578171	sot-r.1 for 102594434	nta-r.1 for 107805791	nta-r.1 for 107814595	nta-r.1 for 107780803	osa-u.5 for 4352639	osa-u.5 for 4343777	osa-u.5 for 4333415	zma-u.5 for 103626058	zma-u.5 for 100277866	zma-u.5 for 103640485	tae-r.2 for 123044354	tae-r.2 for 123091126	tae-r.2 for 123086850	hvu-r.1 for 123425477	hvu-r.1 for 123447781	hvu-r.1 for 123395714	sbi-r.1 for 8062523	sbi-r.1 for 8063225	sbi-r.1 for 8078986	bdi-r.1 for 100828848	bdi-r.1 for 100828062	bdi-r.1 for 100833659

Ortholog

Ortholog ID: 1978

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620)

uncharacterized LOC103832914

uncharacterized LOC103837206

uncharacterized LOC103869445

uncharacterized LOC106397236

uncharacterized LOC106435645

uncharacterized LOC106346589

uncharacterized LOC107894310

uncharacterized LOC107938378

uncharacterized LOC107943028

uncharacterized LOC102618172

uncharacterized LOC102615116

uncharacterized LOC100813272

uncharacterized LOC100800721

uncharacterized LOC100792748

uncharacterized LOC100257657

uncharacterized LOC100252320

uncharacterized LOC7469614

uncharacterized LOC18104811

uncharacterized LOC7465058

uncharacterized LOC25485360

uncharacterized LOC25489930

uncharacterized LOC11420386

uncharacterized LOC101246097

uncharacterized LOC101265729

uncharacterized LOC102578171

uncharacterized LOC102594434

uncharacterized LOC107805791

uncharacterized LOC107814595

uncharacterized LOC107825501

uncharacterized LOC4352639

uncharacterized LOC4343777

uncharacterized LOC4333415

uncharacterized LOC103626058

uncharacterized LOC100277866

uncharacterized LOC100383524

uncharacterized LOC123044354

uncharacterized LOC123086850

uncharacterized LOC123119625

uncharacterized LOC123425477

uncharacterized LOC123447781

uncharacterized LOC123395714

uncharacterized LOC8062523

uncharacterized LOC8078986

uncharacterized LOC8069690

uncharacterized LOC100828848

uncharacterized LOC100828062

uncharacterized LOC100833659

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00010	Glycolysis / Gluconeogenesis	4
gma01200	Carbon metabolism	3
gma01230	Biosynthesis of amino acids	3
gma00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00670	One carbon pool by folate	5
sot01200	Carbon metabolism	4
sot00040	Pentose and glucuronate interconversions	3
sot01230	Biosynthesis of amino acids	3
sot00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	4
nta04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00380	Tryptophan metabolism	2
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00562	Inositol phosphate metabolism	5
tae04070	Phosphatidylinositol signaling system	2
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00460	Cyanoamino acid metabolism	2
hvu00500	Starch and sucrose metabolism	2
hvu00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	5
sbi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00010	Glycolysis / Gluconeogenesis	2
sbi00710	Carbon fixation by Calvin cycle	2
sbi01200	Carbon metabolism	2
sbi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	3
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	2

Expression

Expression pattern

Entrez Gene ID^*

821490

841407

103832914

103837206

103869445

106397236

106435645

106346589

107894310

107938378

107943028

102618172

102615116

100813272

100800721

100792748

100257657

100252320

7469614

18104811

7465058

25485360

25489930

11420386

101246097

101265729

102578171

102594434

107805791

107814595

107825501

4352639

4343777

4333415

103626058

100277866

100383524

123044354

123086850

123119625

123425477

123447781

123395714

8062523

8078986

8069690

100828848

100828062

100833659

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	3	3	3	2	3	2	3	3	2	2	3	3	3	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G19540 (ath-m.4.str coexpression data)

Top 50 enrichment test to AT3G19540 (ath-m.4.str coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**