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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   AT3G56830   YCF20-like protein (DUF565) 
 ath-u.5   AT3G56830   YCF20-like protein (DUF565) 
 ath-r.7   AT3G56830   YCF20-like protein (DUF565) 
 ath-m.9   AT3G56830   YCF20-like protein (DUF565) 
 ath-e.2   AT3G56830   YCF20-like protein (DUF565) 
 ath-m.4.bio   AT3G56830   YCF20-like protein (DUF565) 
 ath-m.4.hor   AT3G56830   YCF20-like protein (DUF565) 
 ath-m.4.lig   AT3G56830   YCF20-like protein (DUF565) 
 ath-m.4.tis   AT3G56830   YCF20-like protein (DUF565) 
 bna-r.1   125591155   uncharacterized LOC125591155 
 bna-r.1   106368055   ycf20-like protein 
 ghi-r.1   107910623   ycf20-like protein 
 ghi-r.1   107951323   ycf20-like protein 
 ghi-r.1   107951324   uncharacterized LOC107951324 
 cit-r.1   102620684   ycf20-like protein 
 gma-u.5   100306594   uncharacterized protein ycf20 
 gma-u.5   100794421   uncharacterized protein ycf20 
 vvi-u.5   100248989   ycf20-like protein 
 ppo-u.5   7461710   ycf20-like protein 
 mtr-u.5   25491615   uncharacterized protein ycf20 
 sly-u.5   101251834   uncharacterized protein ycf20 
 sot-r.1   102592986   ycf20-like protein 
 nta-r.1   107770232   uncharacterized protein ycf20 
 osa-u.5   112938285   uncharacterized protein ycf20 
 zma-u.5   110366353   Ycf20-like protein 
 tae-r.2   123123968   ycf20-like protein 
 tae-r.2   123114393   ycf20-like protein 
 hvu-r.1   123395173   uncharacterized protein ycf20 
 sbi-r.1   8061397   uncharacterized protein ycf20 
 bdi-r.1   100823118   uncharacterized LOC100823118 

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Top 50 coexpressed genes to AT3G56830 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G56830 (ath-m.4.str coexpression data)

CoexMap"824850"


athAT3G56830 | Entrez gene ID : 824850      
Species ath bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bra
Paralog 9 2 3 1 2 1 1 1 1 1 1 1 1 2 1 1 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
Protein NP_001030875.1 [sequence] [blastp]
NP_001078304.1 [sequence] [blastp]
NP_001319770.1 [sequence] [blastp]
NP_001326683.1 [sequence] [blastp]
NP_001326684.1 [sequence] [blastp]
NP_001326685.1 [sequence] [blastp]
NP_001326686.1 [sequence] [blastp]
NP_001326687.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1,  E.R. 1  (predict for NP_001030875.1)
chlo 9,  mito 1,  E.R. 1  (predict for NP_001078304.1)
chlo 9,  mito 1,  E.R. 1  (predict for NP_001319770.1)
chlo 9,  mito 1,  E.R. 1  (predict for NP_001326683.1)
chlo 9,  mito 1,  E.R. 1  (predict for NP_001326684.1)
chlo 9,  mito 1,  E.R. 1  (predict for NP_001326685.1)
chlo 9,  mito 1,  E.R. 1  (predict for NP_001326686.1)
chlo 9,  mito 1,  E.R. 1  (predict for NP_001326687.1)
Subcellular
localization
TargetP
chlo 4,  other 3  (predict for NP_001030875.1)
chlo 4,  other 3  (predict for NP_001078304.1)
chlo 4,  other 3  (predict for NP_001319770.1)
chlo 4,  other 3  (predict for NP_001326683.1)
chlo 4,  other 3  (predict for NP_001326684.1)
chlo 4,  other 3  (predict for NP_001326685.1)
chlo 4,  other 3  (predict for NP_001326686.1)
chlo 4,  other 3  (predict for NP_001326687.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
AT3G56830
ath-u.5
for
AT3G56830
ath-r.7
for
AT3G56830
ath-m.9
for
AT3G56830
ath-e.2
for
AT3G56830
ath-m.4.bio
for
AT3G56830
ath-m.4.hor
for
AT3G56830
ath-m.4.lig
for
AT3G56830
ath-m.4.tis
for
AT3G56830
bna-r.1
for
125591155
bna-r.1
for
106368055
ghi-r.1
for
107910623
ghi-r.1
for
107951323
ghi-r.1
for
107951324
cit-r.1
for
102620684
gma-u.5
for
100306594
gma-u.5
for
100794421
vvi-u.5
for
100248989
ppo-u.5
for
7461710
mtr-u.5
for
25491615
sly-u.5
for
101251834
sot-r.1
for
102592986
nta-r.1
for
107770232
osa-u.5
for
112938285
zma-u.5
for
110366353
tae-r.2
for
123123968
tae-r.2
for
123114393
hvu-r.1
for
123395173
sbi-r.1
for
8061397
bdi-r.1
for
100823118


Ortholog ID: 10157
Species ath bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta osa zma tae tae hvu sbi bdi
Symbol AT3G56830 LOC125591155 LOC106368055 LOC107910623 LOC107951323 LOC107951324 LOC102620684 LOC100306594 LOC100794421 LOC100248989 LOC7461710 LOC25491615 LOC101251834 LOC102592986 LOC107770232 LOC112938285 LOC110366353 LOC123123968 LOC123114393 LOC123395173 LOC8061397 LOC100823118
Function* YCF20-like protein (DUF565) uncharacterized LOC125591155 ycf20-like protein ycf20-like protein ycf20-like protein uncharacterized LOC107951324 ycf20-like protein uncharacterized protein ycf20 uncharacterized protein ycf20 ycf20-like protein ycf20-like protein uncharacterized protein ycf20 uncharacterized protein ycf20 ycf20-like protein uncharacterized protein ycf20 uncharacterized protein ycf20 Ycf20-like protein ycf20-like protein ycf20-like protein uncharacterized protein ycf20 uncharacterized protein ycf20 uncharacterized LOC100823118
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 7
bna00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 7
bna04120 Ubiquitin mediated proteolysis 4
bna04141 Protein processing in endoplasmic reticulum 4
bna00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae00230 Purine metabolism 2
tae01232 Nucleotide metabolism 2
tae01240 Biosynthesis of cofactors 2
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 3
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
tae00561 Glycerolipid metabolism 3
tae00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824850 125591155 106368055 107910623 107951323 107951324 102620684 100306594 100794421 100248989 7461710 25491615 101251834 102592986 107770232 112938285 110366353 123123968 123114393 123395173 8061397 100823118
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