ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.str	AT3G58050	uncharacterized protein
ath-u.5	AT3G58050	uncharacterized protein
ath-r.7	AT3G58050	uncharacterized protein
ath-m.9	AT3G58050	uncharacterized protein
ath-e.2	AT3G58050	uncharacterized protein
ath-m.4.bio	AT3G58050	uncharacterized protein
ath-m.4.hor	AT3G58050	uncharacterized protein
ath-m.4.lig	AT3G58050	uncharacterized protein
ath-m.4.tis	AT3G58050	uncharacterized protein
ath-u.5	AT2G41960	uncharacterized protein
bra-r.6	103866603	uncharacterized LOC103866603
bra-r.6	103858004	uncharacterized LOC103858004
bra-r.6	103866604	uncharacterized LOC103866604
bna-r.1	106450639	uncharacterized LOC106450639
bna-r.1	125585020	uncharacterized LOC125585020
ghi-r.1	107945984	uncharacterized LOC107945984
ghi-r.1	107922030	uncharacterized LOC107922030
ghi-r.1	107952837	uncharacterized LOC107952837
cit-r.1	102619076	uncharacterized LOC102619076
gma-u.5	100813046	uncharacterized LOC100813046
gma-u.5	100786822	uncharacterized LOC100786822
gma-u.5	100776477	uncharacterized protein DDB_G0283697
vvi-u.5	100257222	uncharacterized LOC100257222
ppo-u.5	7488040	uncharacterized LOC7488040
ppo-u.5	7455633	uncharacterized LOC7455633
mtr-u.5	25483551	uncharacterized LOC25483551
mtr-u.5	11440446	uncharacterized LOC11440446
sly-u.5	101258014	uncharacterized LOC101258014
nta-r.1	107759933	uncharacterized LOC107759933
nta-r.1	107767852	uncharacterized LOC107767852
nta-r.1	107819576	uncharacterized LOC107819576
osa-u.5	4332126	uncharacterized LOC4332126
osa-u.5	4347955	uncharacterized LOC4347955
zma-u.5	103633237	uncharacterized LOC103633237
zma-u.5	103639389	uncharacterized LOC103639389
zma-u.5	103626274	uncharacterized LOC103626274
tae-r.2	123098145	uncharacterized LOC123098145
tae-r.2	123092863	uncharacterized LOC123092863
tae-r.2	123085246	uncharacterized LOC123085246
hvu-r.1	123449224	uncharacterized LOC123449224
sbi-r.1	8056840	uncharacterized LOC8056840
sbi-r.1	8055092	uncharacterized LOC8055092
bdi-r.1	100845501	uncharacterized LOC100845501
bdi-r.1	100832213	uncharacterized LOC100832213
cre-r.1	CHLRE_02g087200v5	uncharacterized protein

Top 50 coexpressed genes to AT3G58050 (ath-m.4.str coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G58050 (ath-m.4.str coexpression data)

CoexMap"824974"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001319788.1 [sequence] [blastp]
NP_001325475.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for NP_001319788.1)
nucl 9	(predict for NP_001325475.1)

Subcellular
localization
TargetP

other 7, mito 4	(predict for NP_001319788.1)
other 7, mito 4	(predict for NP_001325475.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.str for AT3G58050	ath-u.5 for AT3G58050	ath-r.7 for AT3G58050	ath-m.9 for AT3G58050	ath-e.2 for AT3G58050	ath-m.4.bio for AT3G58050	ath-m.4.hor for AT3G58050	ath-m.4.lig for AT3G58050	ath-m.4.tis for AT3G58050	ath-u.5 for AT2G41960	bra-r.6 for 103866603	bra-r.6 for 103858004	bra-r.6 for 103866604	bna-r.1 for 106450639	bna-r.1 for 125585020	ghi-r.1 for 107945984	ghi-r.1 for 107922030	ghi-r.1 for 107952837	cit-r.1 for 102619076	gma-u.5 for 100813046	gma-u.5 for 100786822	gma-u.5 for 100776477	vvi-u.5 for 100257222	ppo-u.5 for 7488040	ppo-u.5 for 7455633	mtr-u.5 for 25483551	mtr-u.5 for 11440446	sly-u.5 for 101258014	nta-r.1 for 107759933	nta-r.1 for 107767852	nta-r.1 for 107819576	osa-u.5 for 4332126	osa-u.5 for 4347955	zma-u.5 for 103633237	zma-u.5 for 103639389	zma-u.5 for 103626274	tae-r.2 for 123098145	tae-r.2 for 123092863	tae-r.2 for 123085246	hvu-r.1 for 123449224	sbi-r.1 for 8056840	sbi-r.1 for 8055092	bdi-r.1 for 100845501	bdi-r.1 for 100832213	cre-r.1 for CHLRE_02g087200v5

Ortholog

Ortholog ID: 3920

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized protein

uncharacterized LOC103866603

uncharacterized LOC103858004

uncharacterized LOC103866604

uncharacterized LOC125585020

uncharacterized LOC107945984

uncharacterized LOC107922030

uncharacterized LOC107887215

uncharacterized LOC102619076

uncharacterized LOC100786822

uncharacterized protein DDB_G0283697

stress response protein NST1

uncharacterized LOC100257222

uncharacterized LOC7488040

uncharacterized LOC7455633

uncharacterized LOC25483551

uncharacterized LOC11440446

uncharacterized LOC101258014

uncharacterized LOC107759933

uncharacterized LOC107767852

uncharacterized LOC107819576

uncharacterized LOC4332126

uncharacterized LOC4347955

uncharacterized LOC103633237

uncharacterized LOC103626274

uncharacterized LOC100193558

uncharacterized LOC123098145

uncharacterized LOC123092863

uncharacterized LOC123085246

uncharacterized LOC123449224

uncharacterized LOC8056840

uncharacterized LOC8055092

uncharacterized LOC100845501

uncharacterized LOC100832213

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	3
nta00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04148	Efferocytosis	2
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04814	Motor proteins	2
zma04148	Efferocytosis	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	4
zma03420	Nucleotide excision repair	2
zma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00020	Citrate cycle (TCA cycle)	2
bdi00785	Lipoic acid metabolism	2
bdi01200	Carbon metabolism	2
bdi01210	2-Oxocarboxylic acid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

824974

818796

103866603

103858004

103866604

125585020

107945984

107922030

107887215

102619076

100786822

100776477

100776468

100257222

7488040

7455633

25483551

11440446

101258014

107759933

107767852

107819576

4332126

4347955

103633237

103626274

100193558

123098145

123092863

123085246

123449224

8056840

8055092

100845501

100832213

5727412

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	nta	osa	zma	tae	hvu	sbi	bdi	cre	sot
Paralog	10	3	2	3	1	3	1	2	2	1	3	2	3	3	1	2	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G58050 (ath-m.4.str coexpression data)

Top 50 enrichment test to AT3G58050 (ath-m.4.str coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**