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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   TRM9   DUF4378 domain protein 
 ath-m.9   TRM9   DUF4378 domain protein 
 ath-m.4.bio   TRM9   DUF4378 domain protein 
 ath-m.4.hor   TRM9   DUF4378 domain protein 
 ath-m.4.lig   TRM9   DUF4378 domain protein 
 ath-m.4.tis   TRM9   DUF4378 domain protein 
 ath-u.5   TRM10   GAR2-like protein 
 ath-u.5   TRM11   uncharacterized protein 
 bra-r.6   103853505   uncharacterized LOC103853505 
 bra-r.6   103860717   uncharacterized LOC103860717 
 ghi-r.1   107900909   uncharacterized LOC107900909 
 ghi-r.1   107930066   uncharacterized LOC107930066 
 ghi-r.1   107887223   uncharacterized LOC107887223 
 cit-r.1   127900902   uncharacterized LOC127900902 
 cit-r.1   102621164   hypothetical protein 
 gma-u.5   102661341   uncharacterized LOC102661341 
 gma-u.5   100802653   uncharacterized LOC100802653 
 vvi-u.5   104881794   uncharacterized LOC104881794 
 vvi-u.5   100854402   uncharacterized LOC100854402 
 ppo-u.5   7464907   uncharacterized LOC7464907 
 mtr-u.5   25500962   uncharacterized LOC25500962 
 mtr-u.5   25493647   uncharacterized LOC25493647 
 sly-u.5   TRM9   TONNEAU1 recruiting motif 9 
 sly-u.5   TRM10/11   TONNEAU1 recruiting motif 10/11 
 sot-r.1   102596041   uncharacterized LOC102596041 
 nta-r.1   107786461   uncharacterized LOC107786461 
 nta-r.1   107766122   uncharacterized LOC107766122 
 nta-r.1   107782474   uncharacterized LOC107782474 

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Top 50 coexpressed genes to TRM9 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TRM9 (ath-m.4.str coexpression data)

CoexMap"828010"


athTRM9 | Entrez gene ID : 828010      
Species ath bra ghi cit gma vvi ppo mtr sly sot nta sbi osa tae bna hvu zma cre bdi
Paralog 8 2 3 2 2 2 1 2 2 1 3 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_567186.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_567186.1)
Subcellular
localization
TargetP
other 5,  chlo 4  (predict for NP_567186.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
TRM9
ath-m.9
for
TRM9
ath-m.4.bio
for
TRM9
ath-m.4.hor
for
TRM9
ath-m.4.lig
for
TRM9
ath-m.4.tis
for
TRM9
ath-u.5
for
TRM10
ath-u.5
for
TRM11
bra-r.6
for
103853505
bra-r.6
for
103860717
ghi-r.1
for
107900909
ghi-r.1
for
107930066
ghi-r.1
for
107887223
cit-r.1
for
127900902
cit-r.1
for
102621164
gma-u.5
for
102661341
gma-u.5
for
100802653
vvi-u.5
for
104881794
vvi-u.5
for
100854402
ppo-u.5
for
7464907
mtr-u.5
for
25500962
mtr-u.5
for
25493647
sly-u.5
for
TRM9
sly-u.5
for
TRM10/11
sot-r.1
for
102596041
nta-r.1
for
107786461
nta-r.1
for
107766122
nta-r.1
for
107782474


Ortholog ID: 3712
Species ath ath bra ghi ghi ghi cit cit gma vvi vvi ppo mtr mtr sly sly sot nta nta nta
Symbol TRM10 TRM11 LOC103853505 LOC107887223 LOC107926994 LOC107936388 LOC127900902 LOC102621164 LOC100802653 LOC104881794 LOC100854402 LOC7461740 LOC25500962 LOC25493647 TRM9 TRM10/11 LOC102596041 LOC107766122 LOC107782474 LOC107801648
Function* GAR2-like protein uncharacterized protein uncharacterized LOC103853505 uncharacterized LOC107887223 uncharacterized LOC107926994 uncharacterized LOC107936388 uncharacterized LOC127900902 hypothetical protein uncharacterized LOC100802653 uncharacterized LOC104881794 uncharacterized LOC100854402 uncharacterized LOC7461740 uncharacterized LOC25500962 uncharacterized LOC25493647 TONNEAU1 recruiting motif 9 TONNEAU1 recruiting motif 10/11 uncharacterized LOC102596041 uncharacterized LOC107766122 uncharacterized LOC107782474 uncharacterized LOC107801648
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00053 Ascorbate and aldarate metabolism 2
ppo00520 Amino sugar and nucleotide sugar metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 3
mtr04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826784 828401 103853505 107887223 107926994 107936388 127900902 102621164 100802653 104881794 100854402 7461740 25500962 25493647 101264556 101266546 102596041 107766122 107782474 107801648
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