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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   SIC   hydroxyproline-rich glycoprotein family protein 
 ath-u.5   SIC   hydroxyproline-rich glycoprotein family protein 
 ath-r.7   SIC   hydroxyproline-rich glycoprotein family protein 
 ath-m.9   SIC   hydroxyproline-rich glycoprotein family protein 
 ath-e.2   SIC   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.bio   SIC   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.hor   SIC   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.lig   SIC   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.tis   SIC   hydroxyproline-rich glycoprotein family protein 
 bra-r.6   103862154   protein SICKLE 
 bna-r.1   106442059   protein SICKLE 
 bna-r.1   106396514   protein SICKLE-like 
 ghi-r.1   107959954   protein SICKLE 
 ghi-r.1   107903679   protein SICKLE 
 cit-r.1   102616474   protein SICKLE 
 gma-u.5   102669819   protein SICKLE 
 gma-u.5   100775211   protein SICKLE 
 vvi-u.5   100243767   protein SICKLE 
 ppo-u.5   18096260   protein SICKLE 
 ppo-u.5   7486549   protein SICKLE 
 mtr-u.5   11437138   protein SICKLE 
 sly-u.5   101257364   protein SICKLE 
 sly-u.5   101249715   protein SICKLE 
 sot-r.1   102603652   uncharacterized LOC102603652 
 sot-r.1   102583289   pro-resilin 
 nta-r.1   107803959   uncharacterized LOC107803959 
 nta-r.1   107806438   protein SICKLE-like 
 nta-r.1   107824050   uncharacterized LOC107824050 
 osa-u.5   4329451   protein SICKLE 
 zma-u.5   100191384   uncharacterized LOC100191384 
 zma-u.5   100273229   proline-rich protein 2 
 tae-r.2   123060987   protein pygopus 
 tae-r.2   123182479   protein pygopus 
 tae-r.2   123138093   protein pygopus 
 hvu-r.1   123413437   protein SICKLE 
 sbi-r.1   8080239   translation initiation factor IF-2 
 bdi-r.1   100832764   formin-like protein 20 

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Top 50 coexpressed genes to SIC (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SIC (ath-m.4.str coexpression data)

CoexMap"828552"


athSIC | Entrez gene ID : 828552      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 2 1 2 2 3 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (8 genes)  IMP  
GO:0000380 [list] [network] alternative mRNA splicing, via spliceosome  (10 genes)  IMP  
GO:0009649 [list] [network] entrainment of circadian clock  (12 genes)  IEP IMP  
GO:1901703 [list] [network] protein localization involved in auxin polar transport  (18 genes)  IGI  
GO:0035196 [list] [network] miRNA processing  (30 genes)  IMP  
GO:0030422 [list] [network] siRNA processing  (31 genes)  IMP  
GO:2000012 [list] [network] regulation of auxin polar transport  (39 genes)  IGI  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (112 genes)  IMP  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IEP IMP  
GO:0009409 [list] [network] response to cold  (436 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IMP  
GO CC
GO:0016604 [list] [network] nuclear body  (91 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190822.1 [sequence] [blastp]
NP_001320056.1 [sequence] [blastp]
NP_567704.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001190822.1)
nucl 9  (predict for NP_001320056.1)
nucl 10  (predict for NP_567704.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001190822.1)
other 8  (predict for NP_001320056.1)
other 9  (predict for NP_567704.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
SIC
ath-u.5
for
SIC
ath-r.7
for
SIC
ath-m.9
for
SIC
ath-e.2
for
SIC
ath-m.4.bio
for
SIC
ath-m.4.hor
for
SIC
ath-m.4.lig
for
SIC
ath-m.4.tis
for
SIC
bra-r.6
for
103862154
bna-r.1
for
106442059
bna-r.1
for
106396514
ghi-r.1
for
107959954
ghi-r.1
for
107903679
cit-r.1
for
102616474
gma-u.5
for
102669819
gma-u.5
for
100775211
vvi-u.5
for
100243767
ppo-u.5
for
18096260
ppo-u.5
for
7486549
mtr-u.5
for
11437138
sly-u.5
for
101257364
sly-u.5
for
101249715
sot-r.1
for
102603652
sot-r.1
for
102583289
nta-r.1
for
107803959
nta-r.1
for
107806438
nta-r.1
for
107824050
osa-u.5
for
4329451
zma-u.5
for
100191384
zma-u.5
for
100273229
tae-r.2
for
123060987
tae-r.2
for
123182479
tae-r.2
for
123138093
hvu-r.1
for
123413437
sbi-r.1
for
8080239
bdi-r.1
for
100832764


Ortholog ID: 6621
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol SIC LOC103862154 LOC106442059 LOC106396514 LOC107959954 LOC107903679 LOC102616474 LOC102669819 LOC100775211 LOC100243767 LOC18096260 LOC7486549 LOC11437138 LOC101257364 LOC101249715 LOC102603652 LOC102583289 LOC107803959 LOC107824050 LOC107796534 LOC4329451 LOC100191384 LOC100273229 LOC123060987 LOC123182479 LOC123138093 LOC123413437 LOC8080239 LOC100832764
Function* hydroxyproline-rich glycoprotein family protein protein SICKLE protein SICKLE protein SICKLE-like protein SICKLE protein SICKLE protein SICKLE protein SICKLE protein SICKLE protein SICKLE protein SICKLE protein SICKLE protein SICKLE protein SICKLE protein SICKLE uncharacterized LOC102603652 pro-resilin uncharacterized LOC107803959 uncharacterized LOC107824050 protein SICKLE protein SICKLE uncharacterized LOC100191384 proline-rich protein 2 protein pygopus protein pygopus protein pygopus protein SICKLE translation initiation factor IF-2 formin-like protein 20
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03082 ATP-dependent chromatin remodeling 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 3
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 3
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 2
gma00514 Other types of O-glycan biosynthesis 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 3
sot00670 One carbon pool by folate 3
sot00230 Purine metabolism 2
sot00260 Glycine, serine and threonine metabolism 2
sot00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 3
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 4
zma03040 Spliceosome 2
zma03013 Nucleocytoplasmic transport 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
sbi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi03015 mRNA surveillance pathway 2
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828552 103862154 106442059 106396514 107959954 107903679 102616474 102669819 100775211 100243767 18096260 7486549 11437138 101257364 101249715 102603652 102583289 107803959 107824050 107796534 4329451 100191384 100273229 123060987 123182479 123138093 123413437 8080239 100832764
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