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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   AT4G28080   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   AT4G28080   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-r.7   AT4G28080   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.9   AT4G28080   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-e.2   AT4G28080   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.bio   AT4G28080   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.hor   AT4G28080   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.lig   AT4G28080   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.tis   AT4G28080   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103861804   protein TSS 
 bra-r.6   103834776   protein TSS 
 bna-r.1   106409627   protein REDUCED CHLOROPLAST COVERAGE 2 
 bna-r.1   106440974   protein REDUCED CHLOROPLAST COVERAGE 2 
 bna-r.1   106414207   protein REDUCED CHLOROPLAST COVERAGE 2 
 ghi-r.1   107948399   protein TSS 
 ghi-r.1   107899383   protein TSS 
 cit-r.1   102623823   protein REDUCED CHLOROPLAST COVERAGE 2 
 gma-u.5   100792534   protein TSS 
 gma-u.5   100806823   protein TSS 
 vvi-u.5   100257033   protein REDUCED CHLOROPLAST COVERAGE 2 
 ppo-u.5   7489422   protein REDUCED CHLOROPLAST COVERAGE 2 
 ppo-u.5   7465978   protein REDUCED CHLOROPLAST COVERAGE 2 
 mtr-u.5   112418287   protein TSS 
 sly-u.5   101252601   protein REDUCED CHLOROPLAST COVERAGE 2 
 sot-r.1   102597930   protein TSS 
 nta-r.1   107793365   protein REDUCED CHLOROPLAST COVERAGE 2 
 nta-r.1   107776855   protein REDUCED CHLOROPLAST COVERAGE 2 
 osa-u.5   4328917   protein REDUCED CHLOROPLAST COVERAGE 2 
 tae-r.2   123128742   protein TSS 
 tae-r.2   123139054   protein TSS 
 tae-r.2   123145880   protein TSS 
 hvu-r.1   123401197   protein TSS 
 sbi-r.1   8081975   protein TSS 
 bdi-r.1   100825002   protein TSS 

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Top 50 coexpressed genes to AT4G28080 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G28080 (ath-m.4.str coexpression data)

CoexMap"828923"


athAT4G28080 | Entrez gene ID : 828923      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa tae hvu sbi bdi zma cre
Paralog 9 2 3 2 1 2 1 2 1 1 1 2 1 3 1 1 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0019750 [list] [network] chloroplast localization  (23 genes)  IMP  
GO:0006996 [list] [network] organelle organization  (868 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  ISS  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM ISS  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_194537.7 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 2,  vacu 1,  cysk 1  (predict for NP_194537.7)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_194537.7)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
AT4G28080
ath-u.5
for
AT4G28080
ath-r.7
for
AT4G28080
ath-m.9
for
AT4G28080
ath-e.2
for
AT4G28080
ath-m.4.bio
for
AT4G28080
ath-m.4.hor
for
AT4G28080
ath-m.4.lig
for
AT4G28080
ath-m.4.tis
for
AT4G28080
bra-r.6
for
103861804
bra-r.6
for
103834776
bna-r.1
for
106409627
bna-r.1
for
106440974
bna-r.1
for
106414207
ghi-r.1
for
107948399
ghi-r.1
for
107899383
cit-r.1
for
102623823
gma-u.5
for
100792534
gma-u.5
for
100806823
vvi-u.5
for
100257033
ppo-u.5
for
7489422
ppo-u.5
for
7465978
mtr-u.5
for
112418287
sly-u.5
for
101252601
sot-r.1
for
102597930
nta-r.1
for
107793365
nta-r.1
for
107776855
osa-u.5
for
4328917
tae-r.2
for
123128742
tae-r.2
for
123139054
tae-r.2
for
123145880
hvu-r.1
for
123401197
sbi-r.1
for
8081975
bdi-r.1
for
100825002


Ortholog ID: 8105
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa tae tae tae hvu sbi bdi
Symbol AT4G28080 LOC103861804 LOC103834776 LOC106409627 LOC106440974 LOC106414207 LOC107948399 LOC107899383 LOC102623823 LOC100792534 LOC100806823 LOC100257033 LOC7489422 LOC7465978 LOC112418287 LOC101252601 LOC102597930 LOC107793365 LOC107776855 LOC4328917 LOC123128742 LOC123145880 LOC123142700 LOC123401197 LOC8081975 LOC100825002
Function* Tetratricopeptide repeat (TPR)-like superfamily protein protein TSS protein TSS protein REDUCED CHLOROPLAST COVERAGE 2 protein REDUCED CHLOROPLAST COVERAGE 2 protein REDUCED CHLOROPLAST COVERAGE 2 protein TSS protein TSS protein REDUCED CHLOROPLAST COVERAGE 2 protein TSS protein TSS protein REDUCED CHLOROPLAST COVERAGE 2 protein REDUCED CHLOROPLAST COVERAGE 2 protein REDUCED CHLOROPLAST COVERAGE 2 protein TSS protein REDUCED CHLOROPLAST COVERAGE 2 protein TSS protein REDUCED CHLOROPLAST COVERAGE 2 protein REDUCED CHLOROPLAST COVERAGE 2 protein REDUCED CHLOROPLAST COVERAGE 2 protein TSS protein TSS protein TSS-like protein TSS protein TSS protein TSS
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00710 Carbon fixation by Calvin cycle 2
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra01200 Carbon metabolism 3
bra00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
gma00970 Aminoacyl-tRNA biosynthesis 2
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 8
ppo00710 Carbon fixation by Calvin cycle 7
ppo00010 Glycolysis / Gluconeogenesis 3
ppo00620 Pyruvate metabolism 3
ppo00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 3
ppo01200 Carbon metabolism 3
ppo01230 Biosynthesis of amino acids 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00710 Carbon fixation by Calvin cycle 8
mtr01200 Carbon metabolism 8
mtr00630 Glyoxylate and dicarboxylate metabolism 6
mtr00500 Starch and sucrose metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828923 103861804 103834776 106409627 106440974 106414207 107948399 107899383 102623823 100792534 100806823 100257033 7489422 7465978 112418287 101252601 102597930 107793365 107776855 4328917 123128742 123145880 123142700 123401197 8081975 100825002
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