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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   PLDDELTA   phospholipase D delta 
 ath-u.5   PLDDELTA   phospholipase D delta 
 ath-r.7   PLDDELTA   phospholipase D delta 
 ath-m.9   PLDDELTA   phospholipase D delta 
 ath-e.2   PLDDELTA   phospholipase D delta 
 ath-m.4.bio   PLDDELTA   phospholipase D delta 
 ath-m.4.hor   PLDDELTA   phospholipase D delta 
 ath-m.4.lig   PLDDELTA   phospholipase D delta 
 ath-m.4.tis   PLDDELTA   phospholipase D delta 
 bra-r.6   103873479   phospholipase D delta 
 bra-r.6   103834928   phospholipase D delta 
 bna-r.1   111200343   phospholipase D delta 
 bna-r.1   106361292   phospholipase D delta-like 
 bna-r.1   106347061   phospholipase D delta 
 ghi-r.1   121211302   phospholipase D delta 
 ghi-r.1   121204538   phospholipase D delta 
 cit-r.1   102618083   phospholipase D delta 
 cit-r.1   102622948   phospholipase D delta 
 gma-u.5   100789389   phospholipase D delta 
 gma-u.5   100810824   phospholipase D delta 
 gma-u.5   100779740   phospholipase D delta 
 vvi-u.5   100241982   phospholipase D delta 
 vvi-u.5   100261019   phospholipase D delta-like 
 vvi-u.5   100252422   phospholipase D delta 
 ppo-u.5   7483104   phospholipase D delta 
 ppo-u.5   7485622   phospholipase D delta 
 mtr-u.5   11430291   phospholipase D delta 
 mtr-u.5   11436144   phospholipase D delta 
 sly-u.5   101248969   phospholipase D delta-like 
 sly-u.5   101246303   phospholipase D delta 
 sly-u.5   101264680   phospholipase D delta-like 
 sot-r.1   102583483   phospholipase D delta-like 
 nta-r.1   107812789   phospholipase D delta 
 nta-r.1   107802388   phospholipase D delta 
 osa-u.5   4342872   phospholipase D delta 
 osa-u.5   4347745   phospholipase D delta 
 zma-u.5   100217111   phospholipase D family protein 
 zma-u.5   103647629   phospholipase D delta 
 zma-u.5   103626543   phospholipase D delta 
 tae-r.2   123103662   phospholipase D delta 
 tae-r.2   123104649   phospholipase D delta 
 hvu-r.1   123400213   phospholipase D delta 
 hvu-r.1   123397779   phospholipase D delta-like 
 sbi-r.1   8054988   phospholipase D delta 
 sbi-r.1   8054460   phospholipase D delta 
 bdi-r.1   100840776   phospholipase D delta 
 bdi-r.1   100835966   phospholipase D delta 

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Top 50 coexpressed genes to PLDDELTA (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PLDDELTA (ath-m.4.str coexpression data)

CoexMap"829733"


athPLDDELTA | Entrez gene ID : 829733      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 2 3 3 2 2 3 1 2 2 3 2 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00564 [list] [network] Glycerophospholipid metabolism (99 genes)
ath00565 [list] [network] Ether lipid metabolism (26 genes)
ath04144 [list] [network] Endocytosis (156 genes)
GO BP
GO:0046473 [list] [network] phosphatidic acid metabolic process  (4 genes)  IMP  
GO:0090333 [list] [network] regulation of stomatal closure  (43 genes)  IMP  
GO:0009789 [list] [network] positive regulation of abscisic acid-activated signaling pathway  (53 genes)  IMP  
GO:0012501 [list] [network] programmed cell death  (103 genes)  IMP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP IMP  
GO CC
GO:0090395 [list] [network] plant cell papilla  (3 genes)  IDA  
GO:0098590 [list] [network] plasma membrane region  (43 genes)  IDA  
GO:0015630 [list] [network] microtubule cytoskeleton  (182 genes)  TAS  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA TAS  
GO MF
GO:0004630 [list] [network] phospholipase D activity  (12 genes)  IDA IMP ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_567989.1 [sequence] [blastp]
NP_849501.1 [sequence] [blastp]
NP_849502.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 4,  cysk_plas 3,  nucl 2,  cyto 1,  chlo 1,  pero 1,  cyto_E.R. 1  (predict for NP_567989.1)
cysk 3,  nucl 3,  cysk_plas 2,  chlo 1,  cyto 1  (predict for NP_849501.1)
cysk 3,  cyto 3,  nucl 2,  cysk_plas 2,  chlo 1,  pero 1  (predict for NP_849502.1)
Subcellular
localization
TargetP
other 7  (predict for NP_567989.1)
other 7  (predict for NP_849501.1)
other 7  (predict for NP_849502.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
PLDDELTA
ath-u.5
for
PLDDELTA
ath-r.7
for
PLDDELTA
ath-m.9
for
PLDDELTA
ath-e.2
for
PLDDELTA
ath-m.4.bio
for
PLDDELTA
ath-m.4.hor
for
PLDDELTA
ath-m.4.lig
for
PLDDELTA
ath-m.4.tis
for
PLDDELTA
bra-r.6
for
103873479
bra-r.6
for
103834928
bna-r.1
for
111200343
bna-r.1
for
106361292
bna-r.1
for
106347061
ghi-r.1
for
121211302
ghi-r.1
for
121204538
cit-r.1
for
102618083
cit-r.1
for
102622948
gma-u.5
for
100789389
gma-u.5
for
100810824
gma-u.5
for
100779740
vvi-u.5
for
100241982
vvi-u.5
for
100261019
vvi-u.5
for
100252422
ppo-u.5
for
7483104
ppo-u.5
for
7485622
mtr-u.5
for
11430291
mtr-u.5
for
11436144
sly-u.5
for
101248969
sly-u.5
for
101246303
sly-u.5
for
101264680
sot-r.1
for
102583483
nta-r.1
for
107812789
nta-r.1
for
107802388
osa-u.5
for
4342872
osa-u.5
for
4347745
zma-u.5
for
100217111
zma-u.5
for
103647629
zma-u.5
for
103626543
tae-r.2
for
123103662
tae-r.2
for
123104649
hvu-r.1
for
123400213
hvu-r.1
for
123397779
sbi-r.1
for
8054988
sbi-r.1
for
8054460
bdi-r.1
for
100840776
bdi-r.1
for
100835966


Ortholog ID: 1356
Species ath bra bra bra bna bna ghi ghi cit cit gma gma gma vvi vvi vvi ppo ppo mtr mtr sly sly sly sot sot nta nta osa osa zma zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol PLDDELTA LOC103873479 LOC103834928 LOC103862436 LOC106347061 LOC111207705 LOC121204538 LOC107937835 LOC102618083 LOC102622948 LOC100789389 LOC100810824 LOC100814486 LOC100241982 LOC100261019 LOC100252422 LOC7485622 LOC7468855 LOC11430291 LOC11436144 LOC101246303 LOC101264680 LOC101256058 LOC102583483 LOC102579042 LOC107802388 LOC107780633 LOC4342872 LOC4347745 LOC100217111 LOC103626543 LOC103647321 LOC123121443 LOC123123723 LOC123400213 LOC123397779 LOC8054988 LOC8054460 LOC100840776 LOC100835966
Function* phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta-like phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta-like phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta-like phospholipase D delta-like phospholipase D delta-like phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D family protein phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta-like phospholipase D delta phospholipase D delta phospholipase D delta phospholipase D delta
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 3
ath04145 Phagosome 3
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00564 Glycerophospholipid metabolism 7
bna00565 Ether lipid metabolism 7
bna04144 Endocytosis 7
bna00260 Glycine, serine and threonine metabolism 3
bna01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00564 Glycerophospholipid metabolism 7
bna00565 Ether lipid metabolism 7
bna04144 Endocytosis 7
bna00270 Cysteine and methionine metabolism 2
bna00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi00565 Ether lipid metabolism 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 2
ghi00360 Phenylalanine metabolism 2
ghi00380 Tryptophan metabolism 2
ghi00460 Cyanoamino acid metabolism 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00280 Valine, leucine and isoleucine degradation 2
cit00640 Propanoate metabolism 2
cit01210 2-Oxocarboxylic acid metabolism 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00564 Glycerophospholipid metabolism 2
gma00565 Ether lipid metabolism 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00910 Nitrogen metabolism 2
gma01212 Fatty acid metabolism 2
gma00564 Glycerophospholipid metabolism 2
gma00565 Ether lipid metabolism 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma00230 Purine metabolism 2
gma00500 Starch and sucrose metabolism 2
gma00564 Glycerophospholipid metabolism 2
gma00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00280 Valine, leucine and isoleucine degradation 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
mtr04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 4
mtr00564 Glycerophospholipid metabolism 3
mtr00565 Ether lipid metabolism 3
mtr04144 Endocytosis 3
mtr04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01250 Biosynthesis of nucleotide sugars 5
nta00541 Biosynthesis of various nucleotide sugars 3
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00564 Glycerophospholipid metabolism 3
tae00565 Ether lipid metabolism 3
tae04144 Endocytosis 3
tae00562 Inositol phosphate metabolism 2
tae04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 4
tae00564 Glycerophospholipid metabolism 2
tae00565 Ether lipid metabolism 2
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 4
sbi04144 Endocytosis 2
sbi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 3
bdi00564 Glycerophospholipid metabolism 2
bdi00565 Ether lipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829733 103873479 103834928 103862436 106347061 111207705 121204538 107937835 102618083 102622948 100789389 100810824 100814486 100241982 100261019 100252422 7485622 7468855 11430291 11436144 101246303 101264680 101256058 102583483 102579042 107802388 107780633 4342872 4347745 100217111 103626543 103647321 123121443 123123723 123400213 123397779 8054988 8054460 100840776 100835966
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