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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   AT5G24490   30S ribosomal protein 
 ath-u.5   AT5G24490   30S ribosomal protein 
 ath-r.7   AT5G24490   30S ribosomal protein 
 ath-m.9   AT5G24490   30S ribosomal protein 
 ath-e.2   AT5G24490   30S ribosomal protein 
 ath-m.4.bio   AT5G24490   30S ribosomal protein 
 ath-m.4.hor   AT5G24490   30S ribosomal protein 
 ath-m.4.lig   AT5G24490   30S ribosomal protein 
 ath-m.4.tis   AT5G24490   30S ribosomal protein 
 bra-r.6   103837063   ribosome-binding factor PSRP1, chloroplastic 
 bna-r.1   106428452   ribosome-binding factor PSRP1, chloroplastic-like 
 bna-r.1   106366006   ribosome-binding factor PSRP1, chloroplastic 
 bna-r.1   106362523   ribosome-binding factor PSRP1, chloroplastic-like 
 ghi-r.1   107948238   ribosome-binding factor PSRP1, chloroplastic 
 ghi-r.1   107909453   ribosome-binding factor PSRP1, chloroplastic 
 cit-r.1   102613434   ribosome-binding factor PSRP1, chloroplastic 
 gma-u.5   100784915   30S ribosomal protein 1, chloroplastic-like 
 gma-u.5   100803327   ribosome-binding factor PSRP1, chloroplastic 
 vvi-u.5   100853929   ribosome-binding factor PSRP1, chloroplastic 
 ppo-u.5   7464490   ribosome-binding factor PSRP1, chloroplastic 
 ppo-u.5   7493471   ribosome-binding factor PSRP1, chloroplastic 
 mtr-u.5   11425207   ribosome-binding factor PSRP1, chloroplastic 
 sly-u.5   544268   chloroplast-specific ribosomal protein 
 sot-r.1   102577471   ribosome-binding factor PSRP1, chloroplastic 
 nta-r.1   107819218   ribosome-binding factor PSRP1, chloroplastic-like 
 nta-r.1   107783393   ribosome-binding factor PSRP1, chloroplastic 
 osa-u.5   4334840   ribosome-binding factor PSRP1, chloroplastic 
 zma-u.5   100284918   ribosome-binding factor PSRP1, chloroplastic-like 
 tae-r.2   123087496   ribosome-binding factor PSRP1, chloroplastic 
 tae-r.2   123123940   ribosome-binding factor PSRP1, chloroplastic 
 tae-r.2   123114441   ribosome-binding factor PSRP1, chloroplastic 
 hvu-r.1   123399637   ribosome-binding factor PSRP1, chloroplastic 
 sbi-r.1   8061379   ribosome-binding factor PSRP1, chloroplastic 
 bdi-r.1   100826703   ribosome-binding factor PSRP1, chloroplastic 
 cre-r.1   CHLRE_05g237450v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G24490 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G24490 (ath-m.4.str coexpression data)

CoexMap"832520"


athAT5G24490 | Entrez gene ID : 832520      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 2 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_568447.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 1,  mito 1  (predict for NP_568447.1)
Subcellular
localization
TargetP
chlo 4  (predict for NP_568447.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
AT5G24490
ath-u.5
for
AT5G24490
ath-r.7
for
AT5G24490
ath-m.9
for
AT5G24490
ath-e.2
for
AT5G24490
ath-m.4.bio
for
AT5G24490
ath-m.4.hor
for
AT5G24490
ath-m.4.lig
for
AT5G24490
ath-m.4.tis
for
AT5G24490
bra-r.6
for
103837063
bna-r.1
for
106428452
bna-r.1
for
106366006
bna-r.1
for
106362523
ghi-r.1
for
107948238
ghi-r.1
for
107909453
cit-r.1
for
102613434
gma-u.5
for
100784915
gma-u.5
for
100803327
vvi-u.5
for
100853929
ppo-u.5
for
7464490
ppo-u.5
for
7493471
mtr-u.5
for
11425207
sly-u.5
for
544268
sot-r.1
for
102577471
nta-r.1
for
107819218
nta-r.1
for
107783393
osa-u.5
for
4334840
zma-u.5
for
100284918
tae-r.2
for
123087496
tae-r.2
for
123123940
tae-r.2
for
123114441
hvu-r.1
for
123399637
sbi-r.1
for
8061379
bdi-r.1
for
100826703
cre-r.1
for
CHLRE_05g237450v5


Ortholog ID: 8163
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT5G24490 LOC103837063 LOC106428452 LOC106366006 LOC125610010 LOC107948238 LOC107909453 LOC102613434 LOC100784915 LOC100803327 LOC100853929 LOC7464490 LOC7493471 LOC11425207 LOC544268 LOC102577471 LOC107819218 LOC107783393 LOC4334840 LOC100284918 LOC123087496 LOC123123940 LOC123114441 LOC123399637 LOC8061379 LOC100826703 CHLRE_05g237450v5
Function* 30S ribosomal protein ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic-like ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic-like ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic 30S ribosomal protein 1, chloroplastic-like ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic chloroplast-specific ribosomal protein ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic-like ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic-like ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic ribosome-binding factor PSRP1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 3
gma00010 Glycolysis / Gluconeogenesis 2
gma00020 Citrate cycle (TCA cycle) 2
gma00260 Glycine, serine and threonine metabolism 2
gma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00620 Pyruvate metabolism 2
sly00640 Propanoate metabolism 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00030 Pentose phosphate pathway 2
nta00480 Glutathione metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00561 Glycerolipid metabolism 3
bdi00380 Tryptophan metabolism 2
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00071 Fatty acid degradation 2
cre00592 alpha-Linolenic acid metabolism 2
cre01212 Fatty acid metabolism 2
cre01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832520 103837063 106428452 106366006 125610010 107948238 107909453 102613434 100784915 100803327 100853929 7464490 7493471 11425207 544268 102577471 107819218 107783393 4334840 100284918 123087496 123123940 123114441 123399637 8061379 100826703 5723294
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