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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   NIG1   calcium-binding transcription factor NIG1 
 ath-m.9   NIG1   calcium-binding transcription factor NIG1 
 ath-m.4.bio   NIG1   calcium-binding transcription factor NIG1 
 ath-m.4.hor   NIG1   calcium-binding transcription factor NIG1 
 ath-m.4.lig   NIG1   calcium-binding transcription factor NIG1 
 ath-m.4.tis   NIG1   calcium-binding transcription factor NIG1 
 ath-u.5   AT4G00870   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 bra-r.6   103839572   transcription factor bHLH28 
 bra-r.6   103839575   transcription factor MYC1 
 bna-r.1   106446150   transcription factor bHLH28-like 
 bna-r.1   106364449   transcription factor bHLH28 
 bna-r.1   106366842   transcription factor bHLH28-like 
 ghi-r.1   107910351   transcription factor MYC2 
 ghi-r.1   107911642   transcription factor MYC2 
 ghi-r.1   107912227   transcription factor MYC2 
 cit-r.1   107178701   transcription factor MYC2-like 
 cit-r.1   102607443   transcription factor MYC2-like 
 gma-u.5   100804965   transcription factor MYC2 
 gma-u.5   100795733   transcription factor MYC2 
 gma-u.5   100777730   transcription factor MYC1 
 vvi-u.5   100262545   transcription factor MYC2 
 ppo-u.5   7477819   transcription factor MYC1 
 ppo-u.5   7478791   transcription factor MYC2 
 mtr-u.5   25500640   transcription factor MYC1 
 mtr-u.5   25500639   transcription factor MYC2 
 sly-u.5   101267939   transcription factor bHLH14-like 
 sly-u.5   101267164   transcription factor bHLH14-like 
 sot-r.1   102603452   transcription factor bHLH14-like 
 sot-r.1   102603121   transcription factor MYC4-like 
 sot-r.1   102597494   transcription factor MYC2-like 
 nta-r.1   107774268   transcription factor MYC3 
 nta-r.1   107761668   transcription factor bHLH14 

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Top 50 coexpressed genes to NIG1 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NIG1 (ath-m.4.str coexpression data)

CoexMap"834727"


athNIG1 | Entrez gene ID : 834727      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta sbi cre tae zma osa bdi hvu
Paralog 7 2 3 3 2 3 1 2 2 2 3 2 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042538 [list] [network] hyperosmotic salinity response  (57 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005509 [list] [network] calcium ion binding  (158 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS TAS  
Protein NP_199495.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 1,  plas 1  (predict for NP_199495.1)
Subcellular
localization
TargetP
other 7  (predict for NP_199495.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
NIG1
ath-m.9
for
NIG1
ath-m.4.bio
for
NIG1
ath-m.4.hor
for
NIG1
ath-m.4.lig
for
NIG1
ath-m.4.tis
for
NIG1
ath-u.5
for
AT4G00870
bra-r.6
for
103839572
bra-r.6
for
103839575
bna-r.1
for
106446150
bna-r.1
for
106364449
bna-r.1
for
106366842
ghi-r.1
for
107910351
ghi-r.1
for
107911642
ghi-r.1
for
107912227
cit-r.1
for
107178701
cit-r.1
for
102607443
gma-u.5
for
100804965
gma-u.5
for
100795733
gma-u.5
for
100777730
vvi-u.5
for
100262545
ppo-u.5
for
7477819
ppo-u.5
for
7478791
mtr-u.5
for
25500640
mtr-u.5
for
25500639
sly-u.5
for
101267939
sly-u.5
for
101267164
sot-r.1
for
102603452
sot-r.1
for
102603121
sot-r.1
for
102597494
nta-r.1
for
107774268
nta-r.1
for
107761668


Ortholog ID: 2922
Species ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi ppo ppo mtr mtr sly sot sot sot nta
Symbol AT4G00870 LOC103839572 LOC103839575 LOC106446150 LOC106364449 LOC106366842 LOC107912227 LOC107956486 LOC121210908 LOC107178701 LOC102607443 LOC100804965 LOC100795733 LOC100777730 LOC100262545 LOC7477819 LOC7478791 LOC25500640 LOC25500639 LOC101264068 LOC102601277 LOC102590233 LOC102588761 LOC107761668
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH28 transcription factor MYC1 transcription factor bHLH28-like transcription factor bHLH28 transcription factor bHLH28-like transcription factor MYC2 transcription factor MYC2 transcription factor bHLH14 transcription factor MYC2-like transcription factor MYC2-like transcription factor MYC2 transcription factor MYC2 transcription factor MYC1 transcription factor MYC2 transcription factor MYC1 transcription factor MYC2 transcription factor MYC1 transcription factor MYC2 transcription factor bHLH14-like transcription factor bHLH14-like transcription factor MYC2-like transcription factor MYC2-like transcription factor bHLH14
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 3
ghi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 3
ghi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00430 Taurine and hypotaurine metabolism 2
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi00270 Cysteine and methionine metabolism 2
ghi00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma00900 Terpenoid backbone biosynthesis 2
gma00230 Purine metabolism 2
gma00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 12
ppo04016 MAPK signaling pathway - plant 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 7
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00010 Glycolysis / Gluconeogenesis 2
sly00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 7
sot04016 MAPK signaling pathway - plant 5
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00902 Monoterpenoid biosynthesis 2
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04082 Neuroactive ligand signaling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827990 103839572 103839575 106446150 106364449 106366842 107912227 107956486 121210908 107178701 102607443 100804965 100795733 100777730 100262545 7477819 7478791 25500640 25500639 101264068 102601277 102590233 102588761 107761668
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