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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   LPA66   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.5   LPA66   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-r.7   LPA66   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.9   LPA66   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   LPA66   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   LPA66   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   LPA66   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.lig   LPA66   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   LPA66   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103875002   pentatricopeptide repeat-containing protein At5g48910 
 bna-r.1   106348894   pentatricopeptide repeat-containing protein At5g48910-like 
 bna-r.1   106411493   pentatricopeptide repeat-containing protein At5g48910-like 
 ghi-r.1   107922892   pentatricopeptide repeat-containing protein At5g48910 
 ghi-r.1   107922939   pentatricopeptide repeat-containing protein At5g48910 
 cit-r.1   102624125   pentatricopeptide repeat-containing protein At5g48910 
 gma-u.5   100812343   pentatricopeptide repeat-containing protein At5g48910 
 vvi-u.5   100261359   pentatricopeptide repeat-containing protein At5g48910 
 ppo-u.5   7455688   pentatricopeptide repeat-containing protein At5g48910 

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Top 50 coexpressed genes to LPA66 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LPA66 (ath-m.4.str coexpression data)

CoexMap"834949"


athLPA66 | Entrez gene ID : 834949      
Species ath bra bna ghi cit gma vvi ppo cre nta hvu mtr tae bdi osa zma sly sot sbi
Paralog 9 1 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (230 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_199702.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  mito 3,  pero 3,  chlo_mito 3  (predict for NP_199702.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_199702.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
LPA66
ath-u.5
for
LPA66
ath-r.7
for
LPA66
ath-m.9
for
LPA66
ath-e.2
for
LPA66
ath-m.4.bio
for
LPA66
ath-m.4.hor
for
LPA66
ath-m.4.lig
for
LPA66
ath-m.4.tis
for
LPA66
bra-r.6
for
103875002
bna-r.1
for
106348894
bna-r.1
for
106411493
ghi-r.1
for
107922892
ghi-r.1
for
107922939
cit-r.1
for
102624125
gma-u.5
for
100812343
vvi-u.5
for
100261359
ppo-u.5
for
7455688


Ortholog ID: 14766
Species ath bra bna bna ghi ghi cit gma vvi ppo
Symbol LPA66 LOC103875002 LOC106348894 LOC106411493 LOC107922892 LOC107922939 LOC102624125 LOC100812343 LOC100261359 LOC7455688
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At5g48910 pentatricopeptide repeat-containing protein At5g48910-like pentatricopeptide repeat-containing protein At5g48910-like pentatricopeptide repeat-containing protein At5g48910 pentatricopeptide repeat-containing protein At5g48910 pentatricopeptide repeat-containing protein At5g48910 pentatricopeptide repeat-containing protein At5g48910 pentatricopeptide repeat-containing protein At5g48910 pentatricopeptide repeat-containing protein At5g48910
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834949 103875002 106348894 106411493 107922892 107922939 102624125 100812343 100261359 7455688
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