ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.str	TRM31	uncharacterized protein
ath-m.9	TRM31	uncharacterized protein
ath-m.4.bio	TRM31	uncharacterized protein
ath-m.4.hor	TRM31	uncharacterized protein
ath-m.4.lig	TRM31	uncharacterized protein
ath-m.4.tis	TRM31	uncharacterized protein
ghi-r.1	107959203	uncharacterized LOC107959203
ghi-r.1	107937042	uncharacterized LOC107937042
cit-r.1	102611497	hypothetical protein
gma-u.5	102660067	uncharacterized LOC102660067
vvi-u.5	100247091	uncharacterized LOC100247091
ppo-u.5	7460358	uncharacterized LOC7460358
ppo-u.5	7482346	uncharacterized LOC7482346
mtr-u.5	25490904	uncharacterized LOC25490904
mtr-u.5	11422745	uncharacterized LOC11422745
sly-u.5	TRM31	TONNEAU1 recruiting motif 31
sot-r.1	102591450	uncharacterized LOC102591450
nta-r.1	107763589	uncharacterized LOC107763589
nta-r.1	107781413	uncharacterized LOC107781413
nta-r.1	107786527	uncharacterized LOC107786527

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

Protein

NP_200671.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, nucl 1, mito 1, plas 1, extr 1, E.R. 1, cyto_nucl 1, cysk_nucl 1, E.R._plas 1, mito_plas 1

(predict for NP_200671.1)

Subcellular
localization
TargetP

chlo 6

(predict for NP_200671.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.str for TRM31	ath-m.9 for TRM31	ath-m.4.bio for TRM31	ath-m.4.hor for TRM31	ath-m.4.lig for TRM31	ath-m.4.tis for TRM31	ghi-r.1 for 107959203	ghi-r.1 for 107937042	cit-r.1 for 102611497	gma-u.5 for 102660067	vvi-u.5 for 100247091	ppo-u.5 for 7460358	ppo-u.5 for 7482346	mtr-u.5 for 25490904	mtr-u.5 for 11422745	sly-u.5 for TRM31	sot-r.1 for 102591450	nta-r.1 for 107763589	nta-r.1 for 107781413	nta-r.1 for 107786527

Ortholog

Ortholog ID: 7385

Species

ghi

cit

vvi

ppo

mtr

sly

sot

nta

Symbol

TRM31

Function^*

uncharacterized LOC107937042

uncharacterized LOC107906630

uncharacterized LOC107898249

hypothetical protein

uncharacterized LOC100247091

uncharacterized LOC7460358

uncharacterized LOC7482346

uncharacterized LOC25490904

uncharacterized LOC11422745

TONNEAU1 recruiting motif 31

uncharacterized LOC102591450

uncharacterized LOC107763589

uncharacterized LOC107781413

uncharacterized LOC107786527

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot02010	ABC transporters	2
sot04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00460	Cyanoamino acid metabolism	4
nta00500	Starch and sucrose metabolism	4
nta00999	Biosynthesis of various plant secondary metabolites	4
nta04016	MAPK signaling pathway - plant	2

Expression

Expression pattern

Entrez Gene ID^*

107937042

107906630

107898249

102611497

100247091

7460358

7482346

25490904

11422745

101249483

102591450

107763589

107781413

107786527

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to TRM31 (ath-m.4.str coexpression data)

Top 50 enrichment test to TRM31 (ath-m.4.str coexpression data)


Species	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	sbi	osa	bra	tae	bna	hvu	zma	cre	bdi
Paralog	6	2	1	1	1	2	2	1	1	3	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to TRM31 (ath-m.4.str coexpression data)

Top 50 enrichment test to TRM31 (ath-m.4.str coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**