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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   CDF1   cycling DOF factor 1 
 ath-u.5   CDF1   cycling DOF factor 1 
 ath-r.7   CDF1   cycling DOF factor 1 
 ath-m.9   CDF1   cycling DOF factor 1 
 ath-e.2   CDF1   cycling DOF factor 1 
 ath-m.4.bio   CDF1   cycling DOF factor 1 
 ath-m.4.hor   CDF1   cycling DOF factor 1 
 ath-m.4.lig   CDF1   cycling DOF factor 1 
 ath-m.4.tis   CDF1   cycling DOF factor 1 
 ath-u.5   CDF3   cycling DOF factor 3 
 ath-u.5   CDF2   cycling DOF factor 2 
 bra-r.6   103850147   cyclic dof factor 2 
 bra-r.6   103863905   cyclic dof factor 2 
 bra-r.6   103873236   cyclic dof factor 3 
 bna-r.1   111207855   cyclic dof factor 1-like 
 bna-r.1   125605567   cyclic dof factor 1-like 
 bna-r.1   106369019   cyclic dof factor 1 
 ghi-r.1   107924499   cyclic dof factor 3 
 ghi-r.1   121204727   cyclic dof factor 2 
 ghi-r.1   107946520   cyclic dof factor 3 
 cit-r.1   102612184   cyclic dof factor 3-like 
 cit-r.1   102615735   cyclic dof factor 2 
 cit-r.1   102619892   cyclic dof factor 3-like 
 gma-u.5   778113   cyclic dof factor 3 
 gma-u.5   100813787   zf-Dof domain-containing protein 
 gma-u.5   100813315   cyclic dof factor 2 
 vvi-u.5   100265355   cyclic dof factor 2 
 vvi-u.5   100257057   cyclic dof factor 3 
 vvi-u.5   100254372   cyclic dof factor 2 
 ppo-u.5   7489704   cyclic dof factor 3 
 ppo-u.5   7495982   cyclic dof factor 2 
 ppo-u.5   7464583   cyclic dof factor 3 
 mtr-u.5   25490407   cyclic dof factor 1 
 mtr-u.5   11445690   cyclic dof factor 1 
 mtr-u.5   11435622   cyclic dof factor 1 
 sly-u.5   101243956   cyclic dof factor 1 
 sly-u.5   101248009   cyclic dof factor 1 
 sly-u.5   101262001   cyclic dof factor 1 
 sot-r.1   102583986   cyclic dof factor 3-like 
 sot-r.1   102597615   cyclic dof factor 1-like 
 sot-r.1   102600000   cyclic dof factor 3-like 
 nta-r.1   107832809   cyclic dof factor 1 
 nta-r.1   107761138   cyclic dof factor 1-like 
 nta-r.1   107767788   cyclic dof factor 1-like 
 osa-u.5   4331765   cyclic dof factor 1 
 osa-u.5   4344326   cyclic dof factor 2 
 osa-u.5   9272566   cyclic dof factor 2 
 zma-u.5   100276261   uncharacterized LOC100276261 
 zma-u.5   100193013   uncharacterized LOC100193013 
 zma-u.5   103650023   cyclic dof factor 2 
 tae-r.2   123069617   cyclic dof factor 2 
 tae-r.2   123093309   cyclic dof factor 1 
 tae-r.2   123098577   cyclic dof factor 1 
 hvu-r.1   123424683   cyclic dof factor 1-like 
 hvu-r.1   123449559   cyclic dof factor 1-like 
 hvu-r.1   123443531   cyclic dof factor 3-like 
 sbi-r.1   8085828   cyclic dof factor 2 
 sbi-r.1   8082122   cyclic dof factor 1 
 sbi-r.1   8054666   cyclic dof factor 2 
 bdi-r.1   100820888   cyclic dof factor 2 
 bdi-r.1   100825862   cyclic dof factor 1 
 bdi-r.1   100837366   cyclic dof factor 2 

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Top 50 coexpressed genes to CDF1 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CDF1 (ath-m.4.str coexpression data)

CoexMap"836364"


athCDF1 | Entrez gene ID : 836364      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04712 [list] [network] Circadian rhythm - plant (43 genes)
GO BP
GO:0048510 [list] [network] regulation of timing of transition from vegetative to reproductive phase  (43 genes)  IMP  
GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem  (186 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (200 genes)  IDA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA IPI ISM  
GO MF
GO:0001227 [list] [network] DNA-binding transcription repressor activity, RNA polymerase II-specific  (2 genes)  IDA IMP  
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (12 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IDA ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_201049.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1,  extr 1,  golg 1  (predict for NP_201049.3)
Subcellular
localization
TargetP
other 9  (predict for NP_201049.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
CDF1
ath-u.5
for
CDF1
ath-r.7
for
CDF1
ath-m.9
for
CDF1
ath-e.2
for
CDF1
ath-m.4.bio
for
CDF1
ath-m.4.hor
for
CDF1
ath-m.4.lig
for
CDF1
ath-m.4.tis
for
CDF1
ath-u.5
for
CDF3
ath-u.5
for
CDF2
bra-r.6
for
103850147
bra-r.6
for
103863905
bra-r.6
for
103873236
bna-r.1
for
111207855
bna-r.1
for
125605567
bna-r.1
for
106369019
ghi-r.1
for
107924499
ghi-r.1
for
121204727
ghi-r.1
for
107946520
cit-r.1
for
102612184
cit-r.1
for
102615735
cit-r.1
for
102619892
gma-u.5
for
778113
gma-u.5
for
100813787
gma-u.5
for
100813315
vvi-u.5
for
100265355
vvi-u.5
for
100257057
vvi-u.5
for
100254372
ppo-u.5
for
7489704
ppo-u.5
for
7495982
ppo-u.5
for
7464583
mtr-u.5
for
25490407
mtr-u.5
for
11445690
mtr-u.5
for
11435622
sly-u.5
for
101243956
sly-u.5
for
101248009
sly-u.5
for
101262001
sot-r.1
for
102583986
sot-r.1
for
102597615
sot-r.1
for
102600000
nta-r.1
for
107832809
nta-r.1
for
107761138
nta-r.1
for
107767788
osa-u.5
for
4331765
osa-u.5
for
4344326
osa-u.5
for
9272566
zma-u.5
for
100276261
zma-u.5
for
100193013
zma-u.5
for
103650023
tae-r.2
for
123069617
tae-r.2
for
123093309
tae-r.2
for
123098577
hvu-r.1
for
123424683
hvu-r.1
for
123449559
hvu-r.1
for
123443531
sbi-r.1
for
8085828
sbi-r.1
for
8082122
sbi-r.1
for
8054666
bdi-r.1
for
100820888
bdi-r.1
for
100825862
bdi-r.1
for
100837366


Ortholog ID: 658
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi
Symbol CDF1 CDF3 CDF2 LOC103863905 LOC103874677 LOC103855006 LOC106432304 LOC106435356 LOC106352672 LOC107924499 LOC107946520 LOC107890451 LOC102612184 LOC102615735 LOC102629672 LOC100813315 LOC100788247 LOC100788246 LOC100265355 LOC100257057 LOC100241530 LOC7495982 LOC7463038 LOC11435622 LOC11410541 LOC11409779 LOC101243956 LOC101248009 LOC101252243 LOC102600000 LOC102603307 LOC102582118 LOC107823205 LOC107804993 LOC107802463 LOC4331765 LOC4344326 LOC4324267 LOC100276261 LOC100275712 LOC100275567 LOC123061029 LOC123051520 LOC123078183 LOC123424683 LOC123449559 LOC123443531 LOC8085828 LOC8082122 LOC8054666 LOC100825862 LOC100841048 LOC100824853
Function* cycling DOF factor 1 cycling DOF factor 3 cycling DOF factor 2 cyclic dof factor 2 cyclic dof factor 1 cyclic dof factor 1 cyclic dof factor 2 cyclic dof factor 3 cyclic dof factor 2 cyclic dof factor 3 cyclic dof factor 3 cyclic dof factor 1 cyclic dof factor 3-like cyclic dof factor 2 cyclic dof factor 3 cyclic dof factor 2 cyclic dof factor 2 cyclic dof factor 1 cyclic dof factor 2 cyclic dof factor 3 cyclic dof factor 3 cyclic dof factor 2 cyclic dof factor 3 cyclic dof factor 1 cyclic dof factor 2 cyclic dof factor 1 cyclic dof factor 1 cyclic dof factor 1 cyclic dof factor 1-like cyclic dof factor 3-like cyclic dof factor 1 cyclic dof factor 2-like cyclic dof factor 1 cyclic dof factor 1-like cyclic dof factor 1 cyclic dof factor 1 cyclic dof factor 2 cyclic dof factor 1 uncharacterized LOC100276261 cyclic dof factor 2 uncharacterized LOC100275567 cyclic dof factor 2 cyclic dof factor 1 cyclic dof factor 3 cyclic dof factor 1-like cyclic dof factor 1-like cyclic dof factor 3-like cyclic dof factor 2 cyclic dof factor 1 cyclic dof factor 2 cyclic dof factor 1 cyclic dof factor 1 cyclic dof factor 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 3
bna04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 3
mtr00330 Arginine and proline metabolism 3
mtr04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00010 Glycolysis / Gluconeogenesis 2
zma00030 Pentose phosphate pathway 2
zma00051 Fructose and mannose metabolism 2
zma00052 Galactose metabolism 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00460 Cyanoamino acid metabolism 3
tae00500 Starch and sucrose metabolism 3
tae00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00270 Cysteine and methionine metabolism 2
hvu00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00561 Glycerolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00561 Glycerolipid metabolism 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836364 823904 833962 103863905 103874677 103855006 106432304 106435356 106352672 107924499 107946520 107890451 102612184 102615735 102629672 100813315 100788247 100788246 100265355 100257057 100241530 7495982 7463038 11435622 11410541 11409779 101243956 101248009 101252243 102600000 102603307 102582118 107823205 107804993 107802463 4331765 4344326 4324267 100276261 100275712 100275567 123061029 123051520 123078183 123424683 123449559 123443531 8085828 8082122 8054666 100825862 100841048 100824853
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