ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-m.4.str	AT1G07210	Ribosomal protein S18
ath-u.5	AT1G07210	Ribosomal protein S18
ath-r.7	AT1G07210	Ribosomal protein S18
ath-m.9	AT1G07210	Ribosomal protein S18
ath-e.2	AT1G07210	Ribosomal protein S18
ath-m.4.bio	AT1G07210	Ribosomal protein S18
ath-m.4.hor	AT1G07210	Ribosomal protein S18
ath-m.4.lig	AT1G07210	Ribosomal protein S18
ath-m.4.tis	AT1G07210	Ribosomal protein S18
bra-r.6	103843967	uncharacterized LOC103843967
bra-r.6	103843475	uncharacterized LOC103843475
bna-r.1	125578627	uncharacterized LOC125578627
bna-r.1	106402033	uncharacterized LOC106402033
bna-r.1	BNAANNG15810D	uncharacterized BNAANNG15810D
ghi-r.1	107937026	uncharacterized LOC107937026
ghi-r.1	121212674	uncharacterized LOC121212674
cit-r.1	102625013	uncharacterized LOC102625013
gma-u.5	100820548	30S ribosomal protein S18
vvi-u.5	100263805	uncharacterized LOC100263805
ppo-u.5	18100521	uncharacterized LOC18100521
mtr-u.5	25499734	uncharacterized LOC25499734
sly-u.5	101260982	uncharacterized LOC101260982
sot-r.1	102595364	uncharacterized LOC102595364
sot-r.1	102593686	uncharacterized LOC102593686
nta-r.1	107827312	uncharacterized LOC107827312
osa-u.5	4349032	uncharacterized LOC4349032
zma-u.5	100191266	uncharacterized LOC100191266
zma-u.5	100274313	uncharacterized LOC100274313
tae-r.2	123122989	uncharacterized LOC123122989
tae-r.2	123047222	uncharacterized LOC123047222
tae-r.2	123181911	uncharacterized LOC123181911
hvu-r.1	123442155	uncharacterized LOC123442155
hvu-r.1	123433113	uncharacterized LOC123433113
sbi-r.1	8067566	uncharacterized LOC8067566
sbi-r.1	8065211	uncharacterized LOC8065211
bdi-r.1	100841415	uncharacterized LOC100841415
bdi-r.1	100838711	uncharacterized LOC100838711
cre-r.1	CHLRE_09g388282v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0006412 [list] [network] translation

(926 genes)

IEA

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

GO:0003729 [list] [network] mRNA binding	(1514 genes)	IDA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_172201.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 4, mito 3

(predict for NP_172201.1)

Subcellular
localization
TargetP

mito 8, chlo 3

(predict for NP_172201.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.str for AT1G07210	ath-u.5 for AT1G07210	ath-r.7 for AT1G07210	ath-m.9 for AT1G07210	ath-e.2 for AT1G07210	ath-m.4.bio for AT1G07210	ath-m.4.hor for AT1G07210	ath-m.4.lig for AT1G07210	ath-m.4.tis for AT1G07210	bra-r.6 for 103843967	bra-r.6 for 103843475	bna-r.1 for 125578627	bna-r.1 for 106402033	bna-r.1 for BNAANNG15810D	ghi-r.1 for 107937026	ghi-r.1 for 121212674	cit-r.1 for 102625013	gma-u.5 for 100820548	vvi-u.5 for 100263805	ppo-u.5 for 18100521	mtr-u.5 for 25499734	sly-u.5 for 101260982	sot-r.1 for 102595364	sot-r.1 for 102593686	nta-r.1 for 107827312	osa-u.5 for 4349032	zma-u.5 for 100191266	zma-u.5 for 100274313	tae-r.2 for 123122989	tae-r.2 for 123047222	tae-r.2 for 123181911	hvu-r.1 for 123442155	hvu-r.1 for 123433113	sbi-r.1 for 8067566	sbi-r.1 for 8065211	bdi-r.1 for 100841415	bdi-r.1 for 100838711	cre-r.1 for CHLRE_09g388282v5

Ortholog

Ortholog ID: 6118

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Ribosomal protein S18

uncharacterized LOC103843967

uncharacterized LOC103843475

uncharacterized LOC125578627

uncharacterized BNAANNG15810D

uncharacterized BNAA10G04660D

uncharacterized LOC107937026

uncharacterized LOC121212674

uncharacterized LOC102625013

30S ribosomal protein S18

uncharacterized LOC100263805

uncharacterized LOC18100521

uncharacterized LOC25499734

uncharacterized LOC101260982

uncharacterized LOC102595364

uncharacterized LOC102593686

uncharacterized LOC107827312

uncharacterized LOC4349032

uncharacterized LOC100191266

uncharacterized LOC100274313

uncharacterized LOC123122989

uncharacterized LOC123047222

uncharacterized LOC123054677

uncharacterized LOC123442155

uncharacterized LOC123433113

uncharacterized LOC8067566

uncharacterized LOC8065211

uncharacterized LOC100841415

uncharacterized LOC100838711

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	3
bra00250	Alanine, aspartate and glutamate metabolism	2
bra01240	Biosynthesis of cofactors	2
bra03018	RNA degradation	2
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00240	Pyrimidine metabolism	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04626	Plant-pathogen interaction	2
bna03450	Non-homologous end-joining	2
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2
ghi01240	Biosynthesis of cofactors	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2
ghi01240	Biosynthesis of cofactors	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	2
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00061	Fatty acid biosynthesis	5
zma01212	Fatty acid metabolism	4
zma01200	Carbon metabolism	4
zma00010	Glycolysis / Gluconeogenesis	3
zma01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	4
zma00220	Arginine biosynthesis	2
zma00240	Pyrimidine metabolism	2
zma00250	Alanine, aspartate and glutamate metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	6
hvu03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	7
sbi01200	Carbon metabolism	3
sbi00270	Cysteine and methionine metabolism	2
sbi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	7
sbi01200	Carbon metabolism	3
sbi00270	Cysteine and methionine metabolism	2
sbi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03013	Nucleocytoplasmic transport	2
bdi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	3

Expression

Expression pattern

Entrez Gene ID^*

837232

103843967

103843475

125578627

106419814

106391130

107937026

121212674

102625013

100820548

100263805

18100521

25499734

101260982

102595364

102593686

107827312

4349032

100191266

100274313

123122989

123047222

123054677

123442155

123433113

8067566

8065211

100841415

100838711

5720585

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT1G07210 (ath-m.4.str coexpression data)

Top 50 enrichment test to AT1G07210 (ath-m.4.str coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	2	3	2	1	1	1	1	1	1	2	1	1	2	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G07210 (ath-m.4.str coexpression data)

Top 50 enrichment test to AT1G07210 (ath-m.4.str coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**