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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   UBP2   ubiquitin-specific protease 2 
 ath-u.5   UBP2   ubiquitin-specific protease 2 
 ath-r.7   UBP2   ubiquitin-specific protease 2 
 ath-m.9   UBP2   ubiquitin-specific protease 2 
 ath-e.2   UBP2   ubiquitin-specific protease 2 
 ath-m.4.bio   UBP2   ubiquitin-specific protease 2 
 ath-m.4.hor   UBP2   ubiquitin-specific protease 2 
 ath-m.4.lig   UBP2   ubiquitin-specific protease 2 
 ath-m.4.tis   UBP2   ubiquitin-specific protease 2 
 bra-r.6   103836550   ubiquitin carboxyl-terminal hydrolase 2 
 bra-r.6   103843633   ubiquitin carboxyl-terminal hydrolase 2 
 bra-r.6   103867606   ubiquitin carboxyl-terminal hydrolase 2 
 bna-r.1   106369234   ubiquitin carboxyl-terminal hydrolase 2-like 
 bna-r.1   106430223   ubiquitin carboxyl-terminal hydrolase 2 
 ghi-r.1   107908467   ubiquitin carboxyl-terminal hydrolase 2 
 ghi-r.1   107887234   ubiquitin carboxyl-terminal hydrolase 2 
 cit-r.1   102615386   ubiquitin carboxyl-terminal hydrolase 2 
 gma-u.5   100780952   ubiquitin carboxyl-terminal hydrolase 2 
 gma-u.5   100776156   ubiquitin carboxyl-terminal hydrolase 2 
 vvi-u.5   100255551   ubiquitin carboxyl-terminal hydrolase 2 
 ppo-u.5   7461662   ubiquitin carboxyl-terminal hydrolase 2 
 ppo-u.5   7496628   ubiquitin carboxyl-terminal hydrolase 2 
 mtr-u.5   11435669   ubiquitin carboxyl-terminal hydrolase 2 
 sly-u.5   101264762   ubiquitin carboxyl-terminal hydrolase 2 
 sly-u.5   101245656   ubiquitin carboxyl-terminal hydrolase 2-like 
 sot-r.1   102604177   ubiquitin carboxyl-terminal hydrolase 2 
 sot-r.1   102584496   ubiquitin carboxyl-terminal hydrolase 2 
 nta-r.1   107824150   ubiquitin carboxyl-terminal hydrolase 2-like 
 nta-r.1   107807563   ubiquitin carboxyl-terminal hydrolase 2-like 
 nta-r.1   107783494   ubiquitin carboxyl-terminal hydrolase 2 
 osa-u.5   4347503   ubiquitin carboxyl-terminal hydrolase 2 
 zma-u.5   103647570   ubiquitin carboxyl-terminal hydrolase 2 
 tae-r.2   123104292   ubiquitin carboxyl-terminal hydrolase 1 
 tae-r.2   123112547   ubiquitin carboxyl-terminal hydrolase 2 
 tae-r.2   123122049   ubiquitin carboxyl-terminal hydrolase 2 
 hvu-r.1   123399743   ubiquitin carboxyl-terminal hydrolase 2-like 
 sbi-r.1   8054776   ubiquitin carboxyl-terminal hydrolase 2 
 bdi-r.1   100839956   ubiquitin carboxyl-terminal hydrolase 2 
 bdi-r.1   100834637   ubiquitin carboxyl-terminal hydrolase 2 

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Top 50 coexpressed genes to UBP2 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to UBP2 (ath-m.4.str coexpression data)

CoexMap"839397"


athUBP2 | Entrez gene ID : 839397      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 2 2 1 2 1 2 1 2 2 3 1 1 3 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03083 [list] [network] Polycomb repressive complex (65 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  TAS  
GO CC
GO:0000502 [list] [network] proteasome complex  (53 genes)  TAS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (39 genes)  IMP  
Protein NP_563719.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cysk 1,  golg_plas 1  (predict for NP_563719.1)
Subcellular
localization
TargetP
other 8  (predict for NP_563719.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
UBP2
ath-u.5
for
UBP2
ath-r.7
for
UBP2
ath-m.9
for
UBP2
ath-e.2
for
UBP2
ath-m.4.bio
for
UBP2
ath-m.4.hor
for
UBP2
ath-m.4.lig
for
UBP2
ath-m.4.tis
for
UBP2
bra-r.6
for
103836550
bra-r.6
for
103843633
bra-r.6
for
103867606
bna-r.1
for
106369234
bna-r.1
for
106430223
ghi-r.1
for
107908467
ghi-r.1
for
107887234
cit-r.1
for
102615386
gma-u.5
for
100780952
gma-u.5
for
100776156
vvi-u.5
for
100255551
ppo-u.5
for
7461662
ppo-u.5
for
7496628
mtr-u.5
for
11435669
sly-u.5
for
101264762
sly-u.5
for
101245656
sot-r.1
for
102604177
sot-r.1
for
102584496
nta-r.1
for
107824150
nta-r.1
for
107807563
nta-r.1
for
107783494
osa-u.5
for
4347503
zma-u.5
for
103647570
tae-r.2
for
123104292
tae-r.2
for
123112547
tae-r.2
for
123122049
hvu-r.1
for
123399743
sbi-r.1
for
8054776
bdi-r.1
for
100839956
bdi-r.1
for
100834637


Ortholog ID: 6232
Species ath bra bra bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi bdi
Symbol UBP2 LOC103836550 LOC103843633 LOC103867606 LOC106369234 LOC106430223 LOC107908467 LOC107887234 LOC102615386 LOC100780952 LOC100776156 LOC100255551 LOC7461662 LOC7496628 LOC11435669 LOC101264762 LOC101245656 LOC102604177 LOC102584496 LOC107824150 LOC107807563 LOC107783494 LOC4347503 LOC103647570 LOC123104292 LOC123112547 LOC123122049 LOC123399743 LOC8054776 LOC100839956 LOC100834637
Function* ubiquitin-specific protease 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2-like ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2-like ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2-like ubiquitin carboxyl-terminal hydrolase 2-like ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 1 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2-like ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2 ubiquitin carboxyl-terminal hydrolase 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 3
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 3
ghi03083 Polycomb repressive complex 2
ghi04148 Efferocytosis 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 3
ghi03083 Polycomb repressive complex 2
ghi04148 Efferocytosis 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 3
ppo04144 Endocytosis 3
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 5
ppo01200 Carbon metabolism 4
ppo00010 Glycolysis / Gluconeogenesis 3
ppo00020 Citrate cycle (TCA cycle) 3
ppo00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 4
nta04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 4
nta00450 Selenocompound metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 4
nta04141 Protein processing in endoplasmic reticulum 4
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
nta00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839397 103836550 103843633 103867606 106369234 106430223 107908467 107887234 102615386 100780952 100776156 100255551 7461662 7496628 11435669 101264762 101245656 102604177 102584496 107824150 107807563 107783494 4347503 103647570 123104292 123112547 123122049 123399743 8054776 100839956 100834637
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