ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-m.4.str	AT1G55170	DNA double-strand break repair protein
ath-u.5	AT1G55170	DNA double-strand break repair protein
ath-r.7	AT1G55170	DNA double-strand break repair protein
ath-m.9	AT1G55170	DNA double-strand break repair protein
ath-e.2	AT1G55170	DNA double-strand break repair protein
ath-m.4.bio	AT1G55170	DNA double-strand break repair protein
ath-m.4.hor	AT1G55170	DNA double-strand break repair protein
ath-m.4.lig	AT1G55170	DNA double-strand break repair protein
ath-m.4.tis	AT1G55170	DNA double-strand break repair protein
bra-r.6	103871057	protein FLX-like 3
bna-r.1	106431656	uncharacterized LOC106431656
bna-r.1	106348468	protein FLX-like 3
bna-r.1	106345758	protein FLX-like 3
ghi-r.1	107951930	protein FLX-like 3
ghi-r.1	107950669	protein FLX-like 3
ghi-r.1	107916362	protein FLX-like 3
cit-r.1	102610727	protein FLX-like 3
cit-r.1	102613580	protein FLX-like 3
gma-u.5	100809038	protein FLX-like 3
gma-u.5	100787621	uncharacterized LOC100787621
vvi-u.5	100253153	uncharacterized LOC100253153
vvi-u.5	100242187	uncharacterized LOC100242187
ppo-u.5	18096741	protein FLX-like 3
mtr-u.5	11421490	protein FLX-like 3
sly-u.5	101268750	protein FLX-like 3
sly-u.5	101253185	protein FLX-like 3
sot-r.1	102579069	protein FLX-like 3
sot-r.1	102590962	protein FLX-like 3
nta-r.1	107825348	protein FLX-like 3
nta-r.1	107792302	protein FLX-like 3
nta-r.1	107786609	protein FLX-like 3
osa-u.5	4351708	protein FLX-like 3
zma-u.5	100283029	uncharacterized LOC100283029
tae-r.2	123110964	protein FLX-like 3
tae-r.2	123119941	protein FLX-like 3
tae-r.2	123102924	protein FLX-like 3
hvu-r.1	123395948	protein FLX-like 3
sbi-r.1	8074880	protein FLX-like 3
sbi-r.1	8084756	protein FLX-like 3
bdi-r.1	100840678	protein FLX-like 3

Annotation

functional annotation

Function

DNA double-strand break repair protein

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

IDA ISM

GO MF

GO:0005515 [list] [network] protein binding

(5363 genes)

IPI

Protein

NP_564678.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for NP_564678.1)

Subcellular
localization
TargetP

other 5, mito 4

(predict for NP_564678.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.str for AT1G55170	ath-u.5 for AT1G55170	ath-r.7 for AT1G55170	ath-m.9 for AT1G55170	ath-e.2 for AT1G55170	ath-m.4.bio for AT1G55170	ath-m.4.hor for AT1G55170	ath-m.4.lig for AT1G55170	ath-m.4.tis for AT1G55170	bra-r.6 for 103871057	bna-r.1 for 106431656	bna-r.1 for 106348468	bna-r.1 for 106345758	ghi-r.1 for 107951930	ghi-r.1 for 107950669	ghi-r.1 for 107916362	cit-r.1 for 102610727	cit-r.1 for 102613580	gma-u.5 for 100809038	gma-u.5 for 100787621	vvi-u.5 for 100253153	vvi-u.5 for 100242187	ppo-u.5 for 18096741	mtr-u.5 for 11421490	sly-u.5 for 101268750	sly-u.5 for 101253185	sot-r.1 for 102579069	sot-r.1 for 102590962	nta-r.1 for 107825348	nta-r.1 for 107792302	nta-r.1 for 107786609	osa-u.5 for 4351708	zma-u.5 for 100283029	tae-r.2 for 123110964	tae-r.2 for 123119941	tae-r.2 for 123102924	hvu-r.1 for 123395948	sbi-r.1 for 8074880	sbi-r.1 for 8084756	bdi-r.1 for 100840678

Please wait a moment.

Ortholog

Ortholog ID: 5906

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

DNA double-strand break repair protein

protein FLX-like 3

uncharacterized LOC106431656

protein FLX-like 3

uncharacterized LOC100787621

uncharacterized LOC100253153

uncharacterized LOC100242187

protein FLX-like 3

uncharacterized LOC100283029

protein FLX-like 3

Coexmap

Please wait a moment.

Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2
bra03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03060	Protein export	2
bna03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	5
bna03082	ATP-dependent chromatin remodeling	3
bna04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	5
bna04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	6
ghi04075	Plant hormone signal transduction	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	2
gma03420	Nucleotide excision repair	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	11
nta03013	Nucleocytoplasmic transport	3
nta03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	9
nta03013	Nucleocytoplasmic transport	3
nta03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	5
tae03013	Nucleocytoplasmic transport	3
tae03040	Spliceosome	3
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

841960

103871057

106431656

106348468

106345758

107951930

107916362

107897388

102610727

102613580

100809038

100787621

100253153

100242187

18096741

11421490

101268750

101253185

102579069

102590962

107792302

107786609

107761685

4351708

100283029

123110964

123119941

123102924

123395948

8074880

8084756

100840678

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT1G55170 (ath-m.4.str coexpression data)

Top 50 enrichment test to AT1G55170 (ath-m.4.str coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	3	3	2	2	2	1	1	2	2	3	1	1	3	1	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G55170 (ath-m.4.str coexpression data)

Top 50 enrichment test to AT1G55170 (ath-m.4.str coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**