ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.str	NdhO	NAD(P)H:plastoquinone dehydrogenase complex subunit O
ath-u.5	NdhO	NAD(P)H:plastoquinone dehydrogenase complex subunit O
ath-r.7	NdhO	NAD(P)H:plastoquinone dehydrogenase complex subunit O
ath-m.9	NdhO	NAD(P)H:plastoquinone dehydrogenase complex subunit O
ath-e.2	NdhO	NAD(P)H:plastoquinone dehydrogenase complex subunit O
ath-m.4.bio	NdhO	NAD(P)H:plastoquinone dehydrogenase complex subunit O
ath-m.4.hor	NdhO	NAD(P)H:plastoquinone dehydrogenase complex subunit O
ath-m.4.lig	NdhO	NAD(P)H:plastoquinone dehydrogenase complex subunit O
ath-m.4.tis	NdhO	NAD(P)H:plastoquinone dehydrogenase complex subunit O
bra-r.6	103831946	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
bna-r.1	106354539	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
bna-r.1	106404467	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
ghi-r.1	107914428	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
ghi-r.1	107896743	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
cit-r.1	102608658	hypothetical protein
gma-u.5	100500669	uncharacterized LOC100500669
vvi-u.5	100248924	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
ppo-u.5	7466735	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
mtr-u.5	11420725	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
sly-u.5	101250560	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
sot-r.1	102606098	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
nta-r.1	107823034	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
nta-r.1	107786574	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic-like
osa-u.5	4325238	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
zma-u.5	103636267	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
tae-r.2	123075785	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
tae-r.2	123072622	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
tae-r.2	123059482	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
hvu-r.1	123441034	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
sbi-r.1	8074097	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic
bdi-r.1	100820990	NAD(P)H-quinone oxidoreductase subunit O, chloroplastic

Annotation

functional annotation

KEGG

GO BP

GO:0010258 [list] [network] NADH dehydrogenase complex (plastoquinone) assembly

(8 genes)

IMP

GO CC

GO:0010598 [list] [network] NAD(P)H dehydrogenase complex (plastoquinone)	(13 genes)	TAS
GO:0009535 [list] [network] chloroplast thylakoid membrane	(314 genes)	HDA TAS
GO:0005886 [list] [network] plasma membrane	(2598 genes)	IEA
GO:0005739 [list] [network] mitochondrion	(4244 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	HDA ISM

GO MF

GO:0016655 [list] [network] oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

(12 genes)

IEA

Protein

NP_565093.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, chlo_mito 5, mito 2

(predict for NP_565093.1)

Subcellular
localization
TargetP

chlo 8

(predict for NP_565093.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.str for NdhO	ath-u.5 for NdhO	ath-r.7 for NdhO	ath-m.9 for NdhO	ath-e.2 for NdhO	ath-m.4.bio for NdhO	ath-m.4.hor for NdhO	ath-m.4.lig for NdhO	ath-m.4.tis for NdhO	bra-r.6 for 103831946	bna-r.1 for 106354539	bna-r.1 for 106404467	ghi-r.1 for 107914428	ghi-r.1 for 107896743	cit-r.1 for 102608658	gma-u.5 for 100500669	vvi-u.5 for 100248924	ppo-u.5 for 7466735	mtr-u.5 for 11420725	sly-u.5 for 101250560	sot-r.1 for 102606098	nta-r.1 for 107823034	nta-r.1 for 107786574	osa-u.5 for 4325238	zma-u.5 for 103636267	tae-r.2 for 123075785	tae-r.2 for 123072622	tae-r.2 for 123059482	hvu-r.1 for 123441034	sbi-r.1 for 8074097	bdi-r.1 for 100820990

Ortholog

Ortholog ID: 11522

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

NdhO

Function^*

NAD(P)H:plastoquinone dehydrogenase complex subunit O

NAD(P)H-quinone oxidoreductase subunit O, chloroplastic

hypothetical protein

uncharacterized LOC100500669

NAD(P)H-quinone oxidoreductase subunit O, chloroplastic

NAD(P)H-quinone oxidoreductase subunit O, chloroplastic-like

NAD(P)H-quinone oxidoreductase subunit O, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	6
ath00630	Glyoxylate and dicarboxylate metabolism	5
ath00260	Glycine, serine and threonine metabolism	3
ath00670	One carbon pool by folate	2
ath00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	6
bra00630	Glyoxylate and dicarboxylate metabolism	5
bra00710	Carbon fixation by Calvin cycle	3
bra00260	Glycine, serine and threonine metabolism	2
bra00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00630	Glyoxylate and dicarboxylate metabolism	7
bna01200	Carbon metabolism	7
bna00260	Glycine, serine and threonine metabolism	5
bna00460	Cyanoamino acid metabolism	5
bna00670	One carbon pool by folate	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00630	Glyoxylate and dicarboxylate metabolism	9
bna01200	Carbon metabolism	9
bna00260	Glycine, serine and threonine metabolism	7
bna00670	One carbon pool by folate	7
bna00460	Cyanoamino acid metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	5
cit00195	Photosynthesis	3
cit03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	3
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	3
sly00710	Carbon fixation by Calvin cycle	2
sly00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00195	Photosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	7
nta00195	Photosynthesis	4
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta00195	Photosynthesis	6
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	5
zma00910	Nitrogen metabolism	3
zma01310	Nitrogen cycle	2
zma01230	Biosynthesis of amino acids	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00630	Glyoxylate and dicarboxylate metabolism	3
tae00710	Carbon fixation by Calvin cycle	3
tae01200	Carbon metabolism	3
tae00196	Photosynthesis - antenna proteins	2
tae00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00710	Carbon fixation by Calvin cycle	4
tae01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00195	Photosynthesis	3

Expression

Expression pattern

Entrez Gene ID^*

843827

103831946

106354539

106404467

107914428

107896743

102608658

100500669

100248924

7466735

11420725

101250560

102606098

107823034

107786574

4325238

103636267

123075785

123072622

123059482

123441034

8074097

100820990

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to NdhO (ath-m.4.str coexpression data)

Top 50 enrichment test to NdhO (ath-m.4.str coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	2	2	1	1	1	1	1	1	1	2	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to NdhO (ath-m.4.str coexpression data)

Top 50 enrichment test to NdhO (ath-m.4.str coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**