ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.str	AT1G77060	Phosphoenolpyruvate carboxylase family protein
ath-u.5	AT1G77060	Phosphoenolpyruvate carboxylase family protein
ath-r.7	AT1G77060	Phosphoenolpyruvate carboxylase family protein
ath-m.9	AT1G77060	Phosphoenolpyruvate carboxylase family protein
ath-e.2	AT1G77060	Phosphoenolpyruvate carboxylase family protein
ath-m.4.bio	AT1G77060	Phosphoenolpyruvate carboxylase family protein
ath-m.4.hor	AT1G77060	Phosphoenolpyruvate carboxylase family protein
ath-m.4.lig	AT1G77060	Phosphoenolpyruvate carboxylase family protein
ath-m.4.tis	AT1G77060	Phosphoenolpyruvate carboxylase family protein
ath-u.5	AT1G21440	Phosphoenolpyruvate carboxylase family protein
bra-r.6	103832160	carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic
bra-r.6	103872979	carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic
bna-r.1	106354632	carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic
bna-r.1	106376447	carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic
bna-r.1	106377231	carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic-like
ghi-r.1	107910412	carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic
ghi-r.1	107951472	carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic
nta-r.1	107796125	carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic
osa-u.5	4351693	carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic
cre-r.1	CHLRE_03g200250v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009570 [list] [network] chloroplast stroma	(693 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	HDA ISM

GO MF

Protein

NP_565148.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10

(predict for NP_565148.1)

Subcellular
localization
TargetP

chlo 5, mito 3

(predict for NP_565148.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.str for AT1G77060	ath-u.5 for AT1G77060	ath-r.7 for AT1G77060	ath-m.9 for AT1G77060	ath-e.2 for AT1G77060	ath-m.4.bio for AT1G77060	ath-m.4.hor for AT1G77060	ath-m.4.lig for AT1G77060	ath-m.4.tis for AT1G77060	ath-u.5 for AT1G21440	bra-r.6 for 103832160	bra-r.6 for 103872979	bna-r.1 for 106354632	bna-r.1 for 106376447	bna-r.1 for 106377231	ghi-r.1 for 107910412	ghi-r.1 for 107951472	nta-r.1 for 107796125	osa-u.5 for 4351693	cre-r.1 for CHLRE_03g200250v5

Ortholog

Ortholog ID: 13215

Species

ath

bra

bna

ghi

nta

osa

cre

Symbol

Function^*

Phosphoenolpyruvate carboxylase family protein

carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic

carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic-like

carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00970	Aminoacyl-tRNA biosynthesis	2
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00966	Glucosinolate biosynthesis	11
ath01210	2-Oxocarboxylic acid metabolism	11
ath00270	Cysteine and methionine metabolism	7
ath01230	Biosynthesis of amino acids	7
ath00290	Valine, leucine and isoleucine biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01230	Biosynthesis of amino acids	6
bra04141	Protein processing in endoplasmic reticulum	4
bra00290	Valine, leucine and isoleucine biosynthesis	3
bra00770	Pantothenate and CoA biosynthesis	3
bra01210	2-Oxocarboxylic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00966	Glucosinolate biosynthesis	9
bra01210	2-Oxocarboxylic acid metabolism	8
bra00920	Sulfur metabolism	3
bra00290	Valine, leucine and isoleucine biosynthesis	3
bra00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	4
bna00860	Porphyrin metabolism	4
bna01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	4
bna00860	Porphyrin metabolism	4
bna01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00966	Glucosinolate biosynthesis	7
bna01210	2-Oxocarboxylic acid metabolism	6
bna00290	Valine, leucine and isoleucine biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00061	Fatty acid biosynthesis	8
nta01212	Fatty acid metabolism	8
nta00780	Biotin metabolism	6
nta01240	Biosynthesis of cofactors	6
nta00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00900	Terpenoid backbone biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01200	Carbon metabolism	10
cre00620	Pyruvate metabolism	9
cre00061	Fatty acid biosynthesis	9
cre01212	Fatty acid metabolism	9
cre01240	Biosynthesis of cofactors	6

Expression

Expression pattern

Entrez Gene ID^*

844041

838742

103832160

103872979

106377231

106440719

106347357

107910412

107951472

107796125

4351693

5718941


Species	ath	bra	bna	ghi	nta	osa	cre	vvi	ppo	hvu	mtr	tae	bdi	gma	zma	sly	cit	sot	sbi
Paralog	10	2	3	2	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT1G77060 (ath-m.4.str coexpression data)

Top 50 enrichment test to AT1G77060 (ath-m.4.str coexpression data)

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G77060 (ath-m.4.str coexpression data)

Top 50 enrichment test to AT1G77060 (ath-m.4.str coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**