ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.tis	AT3G13910	hypothetical protein (DUF3511)
ath-u.5	AT3G13910	hypothetical protein (DUF3511)
ath-r.7	AT3G13910	hypothetical protein (DUF3511)
ath-m.9	AT3G13910	hypothetical protein (DUF3511)
ath-e.2	AT3G13910	hypothetical protein (DUF3511)
ath-m.4.bio	AT3G13910	hypothetical protein (DUF3511)
ath-m.4.hor	AT3G13910	hypothetical protein (DUF3511)
ath-m.4.lig	AT3G13910	hypothetical protein (DUF3511)
ath-m.4.str	AT3G13910	hypothetical protein (DUF3511)
ath-u.5	AT2G19460	DUF3511 domain protein (DUF3511)
ath-u.5	AT3G62640	DUF3511 domain protein (DUF3511)
bra-r.6	103859547	uncharacterized LOC103859547
bra-r.6	103850805	uncharacterized LOC103850805
bna-r.1	125578512	uncharacterized LOC125578512
bna-r.1	111201501	uncharacterized LOC111201501
ghi-r.1	107931618	uncharacterized LOC107931618
ghi-r.1	107932212	uncharacterized LOC107932212
ghi-r.1	107925607	uncharacterized LOC107925607
cit-r.1	102618796	hypothetical protein
cit-r.1	102625735	hypothetical protein
cit-r.1	102623546	uncharacterized LOC102623546
gma-u.5	102668315	uncharacterized LOC102668315
gma-u.5	100305758	uncharacterized LOC100305758
gma-u.5	100305934	uncharacterized LOC100305934
vvi-u.5	100266443	uncharacterized LOC100266443
vvi-u.5	100267009	uncharacterized LOC100267009
vvi-u.5	104878982	uncharacterized LOC104878982
ppo-u.5	7478174	uncharacterized LOC7478174
mtr-u.5	11429868	uncharacterized LOC11429868
mtr-u.5	11407646	uncharacterized LOC11407646
mtr-u.5	11429448	uncharacterized LOC11429448
sot-r.1	102586099	uncharacterized LOC102586099
sot-r.1	102593175	uncharacterized LOC102593175
sot-r.1	102597557	uncharacterized LOC102597557
nta-r.1	142175797	uncharacterized LOC142175797
nta-r.1	107761458	uncharacterized LOC107761458
osa-u.5	4334670	uncharacterized LOC4334670
osa-u.5	4323913	uncharacterized LOC4323913
osa-u.5	4326341	uncharacterized LOC4326341
zma-u.5	100277467	DUF3511 domain protein
zma-u.5	100276175	uncharacterized LOC100276175
zma-u.5	100277630	uncharacterized LOC100277630
tae-r.2	123058345	uncharacterized LOC123058345
tae-r.2	123048632	uncharacterized LOC123048632
tae-r.2	123074509	uncharacterized LOC123074509
hvu-r.1	123429405	uncharacterized LOC123429405
hvu-r.1	123453171	uncharacterized LOC123453171
sbi-r.1	110430456	uncharacterized LOC110430456
sbi-r.1	8081093	uncharacterized LOC8081093
sbi-r.1	8078193	uncharacterized LOC8078193
bdi-r.1	112269736	uncharacterized LOC112269736
bdi-r.1	100839633	uncharacterized LOC100839633

Top 50 coexpressed genes to AT3G13910 (ath-m.4.tis coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G13910 (ath-m.4.tis coexpression data)

CoexMap"820604"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001326696.1 [sequence] [blastp]
NP_566468.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for NP_001326696.1)
nucl 10	(predict for NP_566468.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001326696.1)
other 8	(predict for NP_566468.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.tis for AT3G13910	ath-u.5 for AT3G13910	ath-r.7 for AT3G13910	ath-m.9 for AT3G13910	ath-e.2 for AT3G13910	ath-m.4.bio for AT3G13910	ath-m.4.hor for AT3G13910	ath-m.4.lig for AT3G13910	ath-m.4.str for AT3G13910	ath-u.5 for AT2G19460	ath-u.5 for AT3G62640	bra-r.6 for 103859547	bra-r.6 for 103850805	bna-r.1 for 125578512	bna-r.1 for 111201501	ghi-r.1 for 107931618	ghi-r.1 for 107932212	ghi-r.1 for 107925607	cit-r.1 for 102618796	cit-r.1 for 102625735	cit-r.1 for 102623546	gma-u.5 for 102668315	gma-u.5 for 100305758	gma-u.5 for 100305934	vvi-u.5 for 100266443	vvi-u.5 for 100267009	vvi-u.5 for 104878982	ppo-u.5 for 7478174	mtr-u.5 for 11429868	mtr-u.5 for 11407646	mtr-u.5 for 11429448	sot-r.1 for 102586099	sot-r.1 for 102593175	sot-r.1 for 102597557	nta-r.1 for 142175797	nta-r.1 for 107761458	osa-u.5 for 4334670	osa-u.5 for 4323913	osa-u.5 for 4326341	zma-u.5 for 100277467	zma-u.5 for 100276175	zma-u.5 for 100277630	tae-r.2 for 123058345	tae-r.2 for 123048632	tae-r.2 for 123074509	hvu-r.1 for 123429405	hvu-r.1 for 123453171	sbi-r.1 for 110430456	sbi-r.1 for 8081093	sbi-r.1 for 8078193	bdi-r.1 for 112269736	bdi-r.1 for 100839633

Ortholog

Ortholog ID: 616

Species

ath

bra

bna

ghi

cit

gma

vvi

mtr

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

DUF3511 domain protein (DUF3511)

ABC family ABC transporter, putative (DUF3511)

uncharacterized LOC103846677

uncharacterized LOC125578512

uncharacterized BNAA03G03720D

uncharacterized LOC107932212

uncharacterized LOC107906092

uncharacterized LOC107915043

hypothetical protein

uncharacterized LOC102623546

uncharacterized LOC102668315

uncharacterized LOC100305934

uncharacterized LOC100305940

uncharacterized LOC100267009

uncharacterized LOC104878982

uncharacterized LOC11407646

uncharacterized LOC11430698

uncharacterized LOC25481992

uncharacterized LOC102586099

uncharacterized LOC102593175

uncharacterized LOC102597557

uncharacterized LOC142175797

uncharacterized LOC107761458

uncharacterized LOC142182237

uncharacterized LOC4323913

uncharacterized LOC4332582

uncharacterized LOC4344364

uncharacterized LOC100277630

uncharacterized LOC103639235

uncharacterized LOC100275329

uncharacterized LOC123065403

uncharacterized LOC123040534

uncharacterized LOC123085643

uncharacterized LOC123429405

uncharacterized LOC123439892

uncharacterized LOC8081093

uncharacterized LOC8078193

uncharacterized LOC112269736

uncharacterized LOC100838787

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	11
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04130	SNARE interactions in vesicular transport	6
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	3
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	5
cit00941	Flavonoid biosynthesis	2
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00040	Pentose and glucuronate interconversions	4
gma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	4
vvi04144	Endocytosis	3
vvi04130	SNARE interactions in vesicular transport	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	4
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04016	MAPK signaling pathway - plant	4
sot04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00051	Fructose and mannose metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01240	Biosynthesis of cofactors	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00564	Glycerophospholipid metabolism	4
nta00565	Ether lipid metabolism	4
nta04144	Endocytosis	4
nta00330	Arginine and proline metabolism	2
nta00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	3
osa04145	Phagosome	3
osa03013	Nucleocytoplasmic transport	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04130	SNARE interactions in vesicular transport	2
zma04146	Peroxisome	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04814	Motor proteins	3
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3
tae03420	Nucleotide excision repair	3
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00280	Valine, leucine and isoleucine degradation	4
hvu00071	Fatty acid degradation	3
hvu00592	alpha-Linolenic acid metabolism	3
hvu01212	Fatty acid metabolism	3
hvu04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	3

Expression

Expression pattern

Entrez Gene ID^*

816465

825438

831070

103846677

125578512

106419991

107932212

107906092

107915043

102618796

102625735

102623546

102668315

100305934

100305940

100267009

104878982

11407646

11430698

25481992

102586099

102593175

102597557

142175797

107761458

142182237

4323913

4332582

4344364

100277630

103639235

100275329

123065403

123040534

123085643

123429405

123439892

8081093

8078193

112269736

100838787

The preparation time of this page was 0.3 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	sly
Paralog	11	2	2	3	3	3	3	1	3	3	2	3	3	3	2	3	2	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G13910 (ath-m.4.tis coexpression data)

Top 50 enrichment test to AT3G13910 (ath-m.4.tis coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**