ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.tis	AT3G15480	fiber (DUF1218)
ath-u.5	AT3G15480	fiber (DUF1218)
ath-r.7	AT3G15480	fiber (DUF1218)
ath-m.9	AT3G15480	fiber (DUF1218)
ath-e.2	AT3G15480	fiber (DUF1218)
ath-m.4.bio	AT3G15480	fiber (DUF1218)
ath-m.4.hor	AT3G15480	fiber (DUF1218)
ath-m.4.lig	AT3G15480	fiber (DUF1218)
ath-m.4.str	AT3G15480	fiber (DUF1218)
ath-u.5	AT4G27435	fiber (DUF1218)
ath-u.5	AT1G52910	fiber (DUF1218)
ath-u.5	AT1G61065	1,3-beta-glucan synthase component (DUF1218)
bra-r.6	103832705	uncharacterized LOC103832705
bra-r.6	103861693	uncharacterized LOC103861693
bra-r.6	103867152	uncharacterized LOC103867152
bna-r.1	111213838	uncharacterized LOC111213838
bna-r.1	125609042	uncharacterized LOC125609042
bna-r.1	111203897	uncharacterized LOC111203897
ghi-r.1	107903550	uncharacterized LOC107903550
ghi-r.1	107905774	uncharacterized LOC107905774
ghi-r.1	107913977	uncharacterized LOC107913977
cit-r.1	102614202	uncharacterized LOC102614202
cit-r.1	102614086	hypothetical protein
gma-u.5	100817583	uncharacterized LOC100817583
gma-u.5	100792378	uncharacterized LOC100792378
gma-u.5	100499677	uncharacterized LOC100499677
vvi-u.5	100260721	uncharacterized LOC100260721
vvi-u.5	100263752	uncharacterized LOC100263752
ppo-u.5	7462348	uncharacterized LOC7462348
ppo-u.5	7494353	uncharacterized LOC7494353
ppo-u.5	18095617	uncharacterized LOC18095617
mtr-u.5	25493207	uncharacterized LOC25493207
mtr-u.5	25487379	uncharacterized LOC25487379
sly-u.5	101247189	uncharacterized LOC101247189
sly-u.5	101263967	uncharacterized LOC101263967
sly-u.5	101249190	uncharacterized LOC101249190
sot-r.1	102590575	uncharacterized LOC102590575
sot-r.1	102597259	uncharacterized LOC102597259
sot-r.1	102583075	uncharacterized LOC102583075
nta-r.1	107765863	uncharacterized LOC107765863
nta-r.1	107829655	uncharacterized LOC107829655
nta-r.1	107795392	uncharacterized LOC107795392
osa-u.5	4343166	protein MODIFYING WALL LIGNIN-1
zma-u.5	100502065	Fiber protein Fb34
zma-u.5	100286200	uncharacterized LOC100286200
tae-r.2	123080208	uncharacterized LOC123080208
tae-r.2	100682463	uncharacterized LOC100682463
tae-r.2	123062997	uncharacterized LOC123062997
hvu-r.1	123445160	uncharacterized LOC123445160
sbi-r.1	8061658	uncharacterized LOC8061658
bdi-r.1	100838877	uncharacterized LOC100838877
bdi-r.1	100839493	uncharacterized LOC100839493

Top 50 coexpressed genes to AT3G15480 (ath-m.4.tis coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G15480 (ath-m.4.tis coexpression data)

CoexMap"820787"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0030244 [list] [network] cellulose biosynthetic process	(38 genes)	IMP
GO:0016192 [list] [network] vesicle-mediated transport	(246 genes)	IMP

GO CC

GO:0099503 [list] [network] secretory vesicle	(172 genes)	IDA
GO:0005802 [list] [network] trans-Golgi network	(279 genes)	IDA
GO:0009506 [list] [network] plasmodesma	(874 genes)	HDA
GO:0005576 [list] [network] extracellular region	(3158 genes)	ISM

GO MF

Protein

NP_566516.1 [sequence] [blastp]

Subcellular
localization
wolf

vacu 9, plas 1, extr 1

(predict for NP_566516.1)

Subcellular
localization
TargetP

scret 9

(predict for NP_566516.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.tis for AT3G15480	ath-u.5 for AT3G15480	ath-r.7 for AT3G15480	ath-m.9 for AT3G15480	ath-e.2 for AT3G15480	ath-m.4.bio for AT3G15480	ath-m.4.hor for AT3G15480	ath-m.4.lig for AT3G15480	ath-m.4.str for AT3G15480	ath-u.5 for AT4G27435	ath-u.5 for AT1G52910	ath-u.5 for AT1G61065	bra-r.6 for 103832705	bra-r.6 for 103861693	bra-r.6 for 103867152	bna-r.1 for 111213838	bna-r.1 for 125609042	bna-r.1 for 111203897	ghi-r.1 for 107903550	ghi-r.1 for 107905774	ghi-r.1 for 107913977	cit-r.1 for 102614202	cit-r.1 for 102614086	gma-u.5 for 100817583	gma-u.5 for 100792378	gma-u.5 for 100499677	vvi-u.5 for 100260721	vvi-u.5 for 100263752	ppo-u.5 for 7462348	ppo-u.5 for 7494353	ppo-u.5 for 18095617	mtr-u.5 for 25493207	mtr-u.5 for 25487379	sly-u.5 for 101247189	sly-u.5 for 101263967	sly-u.5 for 101249190	sot-r.1 for 102590575	sot-r.1 for 102597259	sot-r.1 for 102583075	nta-r.1 for 107765863	nta-r.1 for 107829655	nta-r.1 for 107795392	osa-u.5 for 4343166	zma-u.5 for 100502065	zma-u.5 for 100286200	tae-r.2 for 123080208	tae-r.2 for 100682463	tae-r.2 for 123062997	hvu-r.1 for 123445160	sbi-r.1 for 8061658	bdi-r.1 for 100838877	bdi-r.1 for 100839493

Ortholog

Ortholog ID: 2145

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

fiber (DUF1218)

1,3-beta-glucan synthase component (DUF1218)

uncharacterized LOC103832705

uncharacterized LOC103867152

uncharacterized LOC111213838

uncharacterized BNAC07G40890D

uncharacterized LOC106406674

uncharacterized LOC107903550

uncharacterized LOC107918130

uncharacterized LOC107948640

uncharacterized LOC102614202

hypothetical protein

uncharacterized LOC100817583

uncharacterized LOC100792378

uncharacterized LOC100499677

uncharacterized LOC100260721

uncharacterized LOC100263752

uncharacterized LOC7462348

uncharacterized LOC7494353

uncharacterized LOC18095617

uncharacterized LOC25493207

uncharacterized LOC25487379

uncharacterized LOC101247189

uncharacterized LOC101263967

uncharacterized LOC101249190

uncharacterized LOC102590575

uncharacterized LOC102583075

uncharacterized LOC102604611

uncharacterized LOC107765863

uncharacterized LOC107788627

uncharacterized LOC107784082

protein MODIFYING WALL LIGNIN-1

Fiber protein Fb34

uncharacterized LOC100286200

uncharacterized LOC123080208

uncharacterized LOC100682463

uncharacterized LOC123062997

uncharacterized LOC123445160

uncharacterized LOC8061658

uncharacterized LOC100838877

uncharacterized LOC100839493

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04145	Phagosome	2
bna04148	Efferocytosis	2
bna04517	IgSF CAM signaling	2
bna04518	Integrin signaling	2
bna04620	Toll-like receptor signaling pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00514	Other types of O-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	3
cit04120	Ubiquitin mediated proteolysis	2
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	2
mtr01250	Biosynthesis of nucleotide sugars	2
mtr00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	6
sly04145	Phagosome	6
sly04142	Lysosome	5
sly04626	Plant-pathogen interaction	3
sly04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	3
sot00941	Flavonoid biosynthesis	2
sot00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	3
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	3
nta01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	4
nta00190	Oxidative phosphorylation	2
nta04145	Phagosome	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00520	Amino sugar and nucleotide sugar metabolism	3
hvu01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00520	Amino sugar and nucleotide sugar metabolism	6
bdi01240	Biosynthesis of cofactors	6
bdi01250	Biosynthesis of nucleotide sugars	6
bdi00040	Pentose and glucuronate interconversions	3
bdi00053	Ascorbate and aldarate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00520	Amino sugar and nucleotide sugar metabolism	3
bdi01250	Biosynthesis of nucleotide sugars	3
bdi01240	Biosynthesis of cofactors	3
bdi01230	Biosynthesis of amino acids	3
bdi00670	One carbon pool by folate	2

Expression

Expression pattern

Entrez Gene ID^*

820787

828852

842398

103832705

103867152

111213838

106407197

106406674

107903550

107918130

107948640

102614202

102614086

100817583

100792378

100499677

100260721

100263752

7462348

7494353

18095617

25493207

25487379

101247189

101263967

101249190

102590575

102583075

102604611

107765863

107788627

107784082

4343166

100502065

100286200

123080208

100682463

123062997

123445160

8061658

100838877

100839493

The preparation time of this page was 2.3 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	3	2	3	2	3	2	3	3	3	1	2	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G15480 (ath-m.4.tis coexpression data)

Top 50 enrichment test to AT3G15480 (ath-m.4.tis coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**