ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.tis	AT3G24820	BSD domain-containing protein
ath-u.5	AT3G24820	BSD domain-containing protein
ath-r.7	AT3G24820	BSD domain-containing protein
ath-m.9	AT3G24820	BSD domain-containing protein
ath-e.2	AT3G24820	BSD domain-containing protein
ath-m.4.bio	AT3G24820	BSD domain-containing protein
ath-m.4.hor	AT3G24820	BSD domain-containing protein
ath-m.4.lig	AT3G24820	BSD domain-containing protein
ath-m.4.str	AT3G24820	BSD domain-containing protein
ath-u.5	AT1G26300	BSD domain-containing protein
ath-u.5	AT1G69030	BSD domain-containing protein
bra-r.6	103828596	uncharacterized LOC103828596
bra-r.6	103852545	uncharacterized LOC103852545
bna-r.1	106435365	uncharacterized LOC106435365
bna-r.1	106428530	uncharacterized LOC106428530
bna-r.1	106393443	uncharacterized LOC106393443
ghi-r.1	107926614	uncharacterized LOC107926614
ghi-r.1	107953346	uncharacterized LOC107953346
ghi-r.1	107946355	uncharacterized LOC107946355
cit-r.1	102617290	uncharacterized LOC102617290
cit-r.1	102626513	uncharacterized LOC102626513
cit-r.1	102628565	uncharacterized LOC102628565
gma-u.5	100814457	uncharacterized LOC100814457
gma-u.5	100800894	BSD domain-containing protein
gma-u.5	100805729	uncharacterized LOC100805729
vvi-u.5	100252678	uncharacterized LOC100252678
vvi-u.5	100854111	uncharacterized LOC100854111
ppo-u.5	7483906	uncharacterized LOC7483906
ppo-u.5	7488630	uncharacterized LOC7488630
ppo-u.5	7482243	uncharacterized LOC7482243
mtr-u.5	11432095	uncharacterized LOC11432095
mtr-u.5	25491554	uncharacterized LOC25491554
mtr-u.5	25493920	uncharacterized LOC25493920
sly-u.5	101263300	uncharacterized LOC101263300
sly-u.5	101256705	uncharacterized LOC101256705
sly-u.5	101265408	uncharacterized LOC101265408
sot-r.1	102580549	uncharacterized LOC102580549
sot-r.1	102580600	uncharacterized LOC102580600
sot-r.1	102584867	uncharacterized LOC102584867
nta-r.1	107765441	uncharacterized LOC107765441
nta-r.1	107774599	uncharacterized LOC107774599
nta-r.1	107792097	uncharacterized LOC107792097
osa-u.5	4337292	uncharacterized LOC4337292
osa-u.5	4330590	uncharacterized LOC4330590
zma-u.5	100383106	uncharacterized LOC100383106
zma-u.5	100283988	uncharacterized LOC100283988
zma-u.5	100272452	uncharacterized LOC100272452
tae-r.2	123128254	uncharacterized LOC123128254
tae-r.2	123054813	uncharacterized LOC123054813
hvu-r.1	123428036	uncharacterized LOC123428036
hvu-r.1	123402563	uncharacterized LOC123402563
sbi-r.1	8070275	uncharacterized LOC8070275
sbi-r.1	8071747	uncharacterized LOC8071747
sbi-r.1	8080561	uncharacterized LOC8080561
bdi-r.1	100825882	uncharacterized LOC100825882
bdi-r.1	100827890	uncharacterized LOC100827890
cre-r.1	CHLRE_06g291250v5	uncharacterized protein

Top 50 coexpressed genes to AT3G24820 (ath-m.4.tis coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G24820 (ath-m.4.tis coexpression data)

CoexMap"822080"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_566755.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, cyto_nucl 3, chlo 3, nucl 1, chlo_mito 1

(predict for NP_566755.1)

Subcellular
localization
TargetP

other 5, mito 3

(predict for NP_566755.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.tis for AT3G24820	ath-u.5 for AT3G24820	ath-r.7 for AT3G24820	ath-m.9 for AT3G24820	ath-e.2 for AT3G24820	ath-m.4.bio for AT3G24820	ath-m.4.hor for AT3G24820	ath-m.4.lig for AT3G24820	ath-m.4.str for AT3G24820	ath-u.5 for AT1G26300	ath-u.5 for AT1G69030	bra-r.6 for 103828596	bra-r.6 for 103852545	bna-r.1 for 106435365	bna-r.1 for 106428530	bna-r.1 for 106393443	ghi-r.1 for 107926614	ghi-r.1 for 107953346	ghi-r.1 for 107946355	cit-r.1 for 102617290	cit-r.1 for 102626513	cit-r.1 for 102628565	gma-u.5 for 100814457	gma-u.5 for 100800894	gma-u.5 for 100805729	vvi-u.5 for 100252678	vvi-u.5 for 100854111	ppo-u.5 for 7483906	ppo-u.5 for 7488630	ppo-u.5 for 7482243	mtr-u.5 for 11432095	mtr-u.5 for 25491554	mtr-u.5 for 25493920	sly-u.5 for 101263300	sly-u.5 for 101256705	sly-u.5 for 101265408	sot-r.1 for 102580549	sot-r.1 for 102580600	sot-r.1 for 102584867	nta-r.1 for 107765441	nta-r.1 for 107774599	nta-r.1 for 107792097	osa-u.5 for 4337292	osa-u.5 for 4330590	zma-u.5 for 100383106	zma-u.5 for 100283988	zma-u.5 for 100272452	tae-r.2 for 123128254	tae-r.2 for 123054813	hvu-r.1 for 123428036	hvu-r.1 for 123402563	sbi-r.1 for 8070275	sbi-r.1 for 8071747	sbi-r.1 for 8080561	bdi-r.1 for 100825882	bdi-r.1 for 100827890	cre-r.1 for CHLRE_06g291250v5

Ortholog

Ortholog ID: 1861

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

BSD domain-containing protein

uncharacterized LOC103828596

uncharacterized LOC103852545

uncharacterized LOC106435365

uncharacterized LOC106393443

uncharacterized LOC106434824

uncharacterized LOC107934772

uncharacterized LOC107918355

uncharacterized LOC107922985

uncharacterized LOC102617290

uncharacterized LOC102626513

uncharacterized LOC102628565

uncharacterized LOC100814457

BSD domain-containing protein

uncharacterized LOC100805729

uncharacterized LOC100252678

uncharacterized LOC100854111

uncharacterized LOC7483906

uncharacterized LOC7488630

uncharacterized LOC7482243

uncharacterized LOC11432095

uncharacterized LOC25491554

uncharacterized LOC25493920

uncharacterized LOC101263300

uncharacterized LOC101256705

uncharacterized LOC101265408

uncharacterized LOC102580549

uncharacterized LOC102580600

uncharacterized LOC102584867

uncharacterized LOC107774599

uncharacterized LOC107824063

uncharacterized LOC107782938

uncharacterized LOC4337292

uncharacterized LOC4330590

uncharacterized LOC100383106

uncharacterized LOC100283988

uncharacterized LOC100272452

uncharacterized LOC123138089

uncharacterized LOC123428036

uncharacterized LOC123402563

uncharacterized LOC8070275

uncharacterized LOC8071747

uncharacterized LOC8080561

uncharacterized LOC100825882

uncharacterized LOC100827890

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	5
ath01240	Biosynthesis of cofactors	2
ath04075	Plant hormone signal transduction	2
ath04626	Plant-pathogen interaction	2
ath04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04130	SNARE interactions in vesicular transport	2
bna03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	6
bna00230	Purine metabolism	4
bna00240	Pyrimidine metabolism	4
bna01232	Nucleotide metabolism	4
bna04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00514	Other types of O-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00600	Sphingolipid metabolism	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	4
cit04122	Sulfur relay system	2
cit03040	Spliceosome	2
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03060	Protein export	2
cit04144	Endocytosis	2
cit04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04130	SNARE interactions in vesicular transport	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	3
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00520	Amino sugar and nucleotide sugar metabolism	7
sot01250	Biosynthesis of nucleotide sugars	7
sot01240	Biosynthesis of cofactors	4
sot00040	Pentose and glucuronate interconversions	3
sot00053	Ascorbate and aldarate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2
nta00510	N-Glycan biosynthesis	2
nta00513	Various types of N-glycan biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	3
nta00562	Inositol phosphate metabolism	2
nta00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04130	SNARE interactions in vesicular transport	3
osa04144	Endocytosis	2
osa04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00513	Various types of N-glycan biosynthesis	3
zma04144	Endocytosis	2
zma00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3
tae03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	3
hvu00190	Oxidative phosphorylation	3
hvu00010	Glycolysis / Gluconeogenesis	2
hvu00020	Citrate cycle (TCA cycle)	2
hvu03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04142	Lysosome	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03420	Nucleotide excision repair	2
sbi03050	Proteasome	2
sbi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00100	Steroid biosynthesis	3

Expression

Expression pattern

Entrez Gene ID^*

822080

839171

843235

103828596

103852545

106435365

106393443

106434824

107934772

107918355

107922985

102617290

102626513

102628565

100814457

100800894

100805729

100252678

100854111

7483906

7488630

7482243

11432095

25491554

25493920

101263300

101256705

101265408

102580549

102580600

102584867

107774599

107824063

107782938

4337292

4330590

100383106

100283988

100272452

123138089

123428036

123402563

8070275

8071747

8080561

100825882

100827890

5721094

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	2	3	3	3	3	2	3	3	3	3	3	2	3	2	2	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G24820 (ath-m.4.tis coexpression data)

Top 50 enrichment test to AT3G24820 (ath-m.4.tis coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**