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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   ROPGEF3   RHO guanyl-nucleotide exchange factor 3 
 ath-u.5   ROPGEF3   RHO guanyl-nucleotide exchange factor 3 
 ath-r.7   ROPGEF3   RHO guanyl-nucleotide exchange factor 3 
 ath-m.9   ROPGEF3   RHO guanyl-nucleotide exchange factor 3 
 ath-e.2   ROPGEF3   RHO guanyl-nucleotide exchange factor 3 
 ath-m.4.bio   ROPGEF3   RHO guanyl-nucleotide exchange factor 3 
 ath-m.4.hor   ROPGEF3   RHO guanyl-nucleotide exchange factor 3 
 ath-m.4.lig   ROPGEF3   RHO guanyl-nucleotide exchange factor 3 
 ath-m.4.str   ROPGEF3   RHO guanyl-nucleotide exchange factor 3 
 ath-u.5   ROPGEF4   RHO guanyl-nucleotide exchange factor 4 
 ath-u.5   ROPGEF2   RHO guanyl-nucleotide exchange factor 2 
 bra-r.6   103858869   rop guanine nucleotide exchange factor 3 
 bra-r.6   103866931   rop guanine nucleotide exchange factor 4 
 bna-r.1   106450940   rop guanine nucleotide exchange factor 4 
 bna-r.1   106388710   rop guanine nucleotide exchange factor 3-like 
 ghi-r.1   107923776   rop guanine nucleotide exchange factor 3 
 ghi-r.1   107943230   rop guanine nucleotide exchange factor 3 
 ghi-r.1   107911521   rop guanine nucleotide exchange factor 3 
 cit-r.1   102624946   rop guanine nucleotide exchange factor 3 
 cit-r.1   127900642   rop guanine nucleotide exchange factor 3-like 
 gma-u.5   100785956   rop guanine nucleotide exchange factor 3 
 gma-u.5   100806086   rop guanine nucleotide exchange factor 3 
 ppo-u.5   18096355   rop guanine nucleotide exchange factor 3 
 mtr-u.5   11436941   rop guanine nucleotide exchange factor 3 
 mtr-u.5   25500877   rop guanine nucleotide exchange factor 3 
 sly-u.5   101255922   rop guanine nucleotide exchange factor 3 
 nta-r.1   107811117   rop guanine nucleotide exchange factor 3-like 
 nta-r.1   107760675   rop guanine nucleotide exchange factor 2 
 osa-u.5   4349314   rop guanine nucleotide exchange factor 3 
 osa-u.5   4336643   rop guanine nucleotide exchange factor 3 
 zma-u.5   103633172   rop guanine nucleotide exchange factor 3 
 zma-u.5   100382507   Rop guanine nucleotide exchange factor 2 
 zma-u.5   100191669   pollen-specific kinase partner protein 
 hvu-r.1   123427527   rop guanine nucleotide exchange factor 3-like 
 sbi-r.1   8064641   rop guanine nucleotide exchange factor 3 
 bdi-r.1   100826205   rop guanine nucleotide exchange factor 3 
 bdi-r.1   100837707   rop guanine nucleotide exchange factor 3 
 bdi-r.1   100843835   rop guanine nucleotide exchange factor 3 

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Top 50 coexpressed genes to ROPGEF3 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ROPGEF3 (ath-m.4.tis coexpression data)

CoexMap"827967"


athROPGEF3 | Entrez gene ID : 827967      
Species ath bra bna ghi cit gma ppo mtr sly nta osa zma hvu sbi bdi cre tae sot vvi
Paralog 11 2 2 3 2 2 1 2 1 2 2 3 1 1 3 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005085 [list] [network] guanyl-nucleotide exchange factor activity  (24 genes)  IEA ISS  
Protein NP_001118903.1 [sequence] [blastp]
NP_001328183.1 [sequence] [blastp]
NP_001328184.1 [sequence] [blastp]
NP_191956.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 3,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001118903.1)
nucl 5,  cyto 3,  pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001328183.1)
chlo 7,  extr 2  (predict for NP_001328184.1)
nucl 4,  cyto_nucl 4,  cyto 2,  chlo 1,  extr 1,  pero 1,  chlo_mito 1  (predict for NP_191956.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001118903.1)
other 8  (predict for NP_001328183.1)
other 3  (predict for NP_001328184.1)
other 8  (predict for NP_191956.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
ROPGEF3
ath-u.5
for
ROPGEF3
ath-r.7
for
ROPGEF3
ath-m.9
for
ROPGEF3
ath-e.2
for
ROPGEF3
ath-m.4.bio
for
ROPGEF3
ath-m.4.hor
for
ROPGEF3
ath-m.4.lig
for
ROPGEF3
ath-m.4.str
for
ROPGEF3
ath-u.5
for
ROPGEF4
ath-u.5
for
ROPGEF2
bra-r.6
for
103858869
bra-r.6
for
103866931
bna-r.1
for
106450940
bna-r.1
for
106388710
ghi-r.1
for
107923776
ghi-r.1
for
107943230
ghi-r.1
for
107911521
cit-r.1
for
102624946
cit-r.1
for
127900642
gma-u.5
for
100785956
gma-u.5
for
100806086
ppo-u.5
for
18096355
mtr-u.5
for
11436941
mtr-u.5
for
25500877
sly-u.5
for
101255922
nta-r.1
for
107811117
nta-r.1
for
107760675
osa-u.5
for
4349314
osa-u.5
for
4336643
zma-u.5
for
103633172
zma-u.5
for
100382507
zma-u.5
for
100191669
hvu-r.1
for
123427527
sbi-r.1
for
8064641
bdi-r.1
for
100826205
bdi-r.1
for
100837707
bdi-r.1
for
100843835


Ortholog ID: 2894
Species ath ath ath bra bra bna bna ghi ghi ghi cit cit gma gma ppo mtr mtr sly nta nta osa osa zma zma zma hvu sbi bdi bdi bdi
Symbol ROPGEF3 ROPGEF4 ROPGEF2 LOC103858869 LOC103866931 LOC106450874 LOC106434945 LOC107923776 LOC107943230 LOC107911521 LOC102624946 LOC127900642 LOC100785956 LOC100811579 LOC18096355 LOC11436941 LOC25500877 LOC101255922 LOC107811117 LOC107760675 LOC4349314 LOC4336643 LOC103633172 LOC100382507 LOC100191669 LOC123427527 LOC8064641 LOC100826205 LOC100837707 LOC100843835
Function* RHO guanyl-nucleotide exchange factor 3 RHO guanyl-nucleotide exchange factor 4 RHO guanyl-nucleotide exchange factor 2 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 4 rop guanine nucleotide exchange factor 4 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3-like rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3-like rop guanine nucleotide exchange factor 2 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3 Rop guanine nucleotide exchange factor 2 pollen-specific kinase partner protein rop guanine nucleotide exchange factor 3-like rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3 rop guanine nucleotide exchange factor 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 4
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
ghi04517 IgSF CAM signaling 2
ghi04620 Toll-like receptor signaling pathway 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04130 SNARE interactions in vesicular transport 4
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
ghi04517 IgSF CAM signaling 2
ghi04620 Toll-like receptor signaling pathway 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo04814 Motor proteins 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 2
nta00941 Flavonoid biosynthesis 2
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00940 Phenylpropanoid biosynthesis 2
nta00941 Flavonoid biosynthesis 2
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00520 Amino sugar and nucleotide sugar metabolism 8
zma01250 Biosynthesis of nucleotide sugars 8
zma00052 Galactose metabolism 7
zma00500 Starch and sucrose metabolism 7
zma00010 Glycolysis / Gluconeogenesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
zma00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827967 819197 839250 103858869 103866931 106450874 106434945 107923776 107943230 107911521 102624946 127900642 100785956 100811579 18096355 11436941 25500877 101255922 107811117 107760675 4349314 4336643 103633172 100382507 100191669 123427527 8064641 100826205 100837707 100843835
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