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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   GA1   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 ath-m.9   GA1   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 ath-m.4.bio   GA1   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 ath-m.4.hor   GA1   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 ath-m.4.lig   GA1   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 ath-m.4.str   GA1   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 bra-r.6   103836713   ent-copalyl diphosphate synthase, chloroplastic 
 bra-r.6   103860100   ent-copalyl diphosphate synthase, chloroplastic 
 ghi-r.1   107912438   (-)-kolavenyl diphosphate synthase TPS28, chloroplastic 
 cit-r.1   102620281   ent-copalyl diphosphate synthase 1 
 cit-r.1   102623063   (-)-kolavenyl diphosphate synthase TPS28, chloroplastic-like 
 gma-u.5   TPS2   terpene synthase 2 
 gma-u.5   TPS22   copalyl pyrophosphate synthase 
 vvi-u.5   100259570   ent-copalyl diphosphate synthase 1 
 vvi-u.5   100264747   ent-copalyl diphosphate synthase 1 
 ppo-u.5   7464838   ent-copalyl diphosphate synthase 1 
 mtr-u.5   25497503   ent-copalyl diphosphate synthase, chloroplastic 
 mtr-u.5   11422426   ent-copalyl diphosphate synthase, chloroplastic 
 osa-u.5   4329013   ent-copalyl diphosphate synthase 1, chloroplastic-like 
 zma-u.5   103641248   ent-copalyl diphosphate synthase 
 zma-u.5   an1   CPP synthase 
 tae-r.2   123149797   ent-copalyl diphosphate synthase 1, chloroplastic 
 tae-r.2   123149798   ent-copalyl diphosphate synthase 1, chloroplastic 
 tae-r.2   123166683   ent-copalyl diphosphate synthase 1, chloroplastic 
 hvu-r.1   123427038   ent-copalyl diphosphate synthase 1, chloroplastic-like 
 hvu-r.1   123410762   ent-copalyl diphosphate synthase 1, chloroplastic-like 
 hvu-r.1   123413225   ent-copalyl diphosphate synthase 1, chloroplastic-like 
 sbi-r.1   8064919   ent-copalyl diphosphate synthase 1, chloroplastic 
 bdi-r.1   100825198   ent-copalyl diphosphate synthase 1, chloroplastic 

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Top 50 coexpressed genes to GA1 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GA1 (ath-m.4.tis coexpression data)

CoexMap"828182"


athGA1 | Entrez gene ID : 828182      
Species ath bra ghi cit gma vvi ppo mtr osa zma tae hvu sbi bdi sly nta bna sot cre
Paralog 6 2 1 2 2 2 1 2 1 2 3 3 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00904 [list] [network] Diterpenoid biosynthesis (25 genes)
GO BP
GO:0009686 [list] [network] gibberellin biosynthetic process  (20 genes)  IDA IMP  
GO:0009740 [list] [network] gibberellic acid mediated signaling pathway  (41 genes)  TAS  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
GO:0009905 [list] [network] ent-copalyl diphosphate synthase activity  (1 genes)  IDA IMP  
GO:0000287 [list] [network] magnesium ion binding  (34 genes)  IDA  
Protein NP_192187.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  mito 1,  plas 1,  cyto_nucl 1,  cysk_nucl 1,  mito_plas 1  (predict for NP_192187.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_192187.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
GA1
ath-m.9
for
GA1
ath-m.4.bio
for
GA1
ath-m.4.hor
for
GA1
ath-m.4.lig
for
GA1
ath-m.4.str
for
GA1
bra-r.6
for
103836713
bra-r.6
for
103860100
ghi-r.1
for
107912438
cit-r.1
for
102620281
cit-r.1
for
102623063
gma-u.5
for
TPS2
gma-u.5
for
TPS22
vvi-u.5
for
100259570
vvi-u.5
for
100264747
ppo-u.5
for
7464838
mtr-u.5
for
25497503
mtr-u.5
for
11422426
osa-u.5
for
4329013
zma-u.5
for
103641248
zma-u.5
for
an1
tae-r.2
for
123149797
tae-r.2
for
123149798
tae-r.2
for
123166683
hvu-r.1
for
123427038
hvu-r.1
for
123410762
hvu-r.1
for
123413225
sbi-r.1
for
8064919
bdi-r.1
for
100825198


Ortholog ID: 3603
Species bra bra ghi cit cit gma gma vvi vvi ppo mtr mtr osa zma zma tae tae hvu hvu hvu sbi bdi
Symbol LOC103836713 LOC103860100 LOC107923002 LOC102620281 LOC102623063 TPS2 TPS22 LOC100259570 LOC100264747 LOC7464838 LOC25497503 LOC11422426 LOC4329013 LOC103641248 an1 LOC100286847 LOC123107348 LOC123427038 LOC123410762 LOC123413225 LOC8064919 LOC100825198
Function* ent-copalyl diphosphate synthase, chloroplastic ent-copalyl diphosphate synthase, chloroplastic ent-copalyl diphosphate synthase, chloroplastic-like ent-copalyl diphosphate synthase 1 (-)-kolavenyl diphosphate synthase TPS28, chloroplastic-like terpene synthase 2 copalyl pyrophosphate synthase ent-copalyl diphosphate synthase 1 ent-copalyl diphosphate synthase 1 ent-copalyl diphosphate synthase 1 ent-copalyl diphosphate synthase, chloroplastic ent-copalyl diphosphate synthase, chloroplastic ent-copalyl diphosphate synthase 1, chloroplastic-like ent-copalyl diphosphate synthase CPP synthase ent-copalyl diphosphate synthase ent-copalyl diphosphate synthase 1, chloroplastic ent-copalyl diphosphate synthase 1, chloroplastic-like ent-copalyl diphosphate synthase 1, chloroplastic-like ent-copalyl diphosphate synthase 1, chloroplastic-like ent-copalyl diphosphate synthase 1, chloroplastic ent-copalyl diphosphate synthase 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 3
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 9
cit00010 Glycolysis / Gluconeogenesis 2
cit01200 Carbon metabolism 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00730 Thiamine metabolism 3
gma01240 Biosynthesis of cofactors 3
gma00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00904 Diterpenoid biosynthesis 2
gma00730 Thiamine metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 4
vvi04075 Plant hormone signal transduction 4
vvi04626 Plant-pathogen interaction 4
vvi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00904 Diterpenoid biosynthesis 2
mtr00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 6
osa00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00904 Diterpenoid biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00904 Diterpenoid biosynthesis 8
tae00999 Biosynthesis of various plant secondary metabolites 4
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
hvu00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
hvu01200 Carbon metabolism 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00062 Fatty acid elongation 2
sbi04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103836713 103860100 107923002 102620281 102623063 100808585 100784193 100259570 100264747 7464838 25497503 11422426 4329013 103641248 542253 100286847 123107348 123427038 123410762 123413225 8064919 100825198
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