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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   ARF9   auxin response factor 9 
 ath-u.5   ARF9   auxin response factor 9 
 ath-r.7   ARF9   auxin response factor 9 
 ath-m.9   ARF9   auxin response factor 9 
 ath-e.2   ARF9   auxin response factor 9 
 ath-m.4.bio   ARF9   auxin response factor 9 
 ath-m.4.hor   ARF9   auxin response factor 9 
 ath-m.4.lig   ARF9   auxin response factor 9 
 ath-m.4.str   ARF9   auxin response factor 9 
 ath-u.5   ARF11   auxin response factor 11 
 ath-u.5   ARF18   auxin response factor 18 
 bra-r.6   ARF9-2   auxin response factor 9 
 bra-r.6   ARF9-1   auxin response factor 9 
 bra-r.6   ARF18-2   auxin response factor 18 
 bna-r.1   106450494   auxin response factor 11 
 bna-r.1   106396799   auxin response factor 18 
 bna-r.1   106414111   auxin response factor 9 
 ghi-r.1   107904460   auxin response factor 9 
 ghi-r.1   107924220   auxin response factor 18 
 ghi-r.1   107951171   auxin response factor 9 
 cit-r.1   102627440   auxin response factor 18-like 
 cit-r.1   102627122   auxin response factor 18 
 cit-r.1   102625615   auxin response factor 9 
 gma-u.5   100820503   auxin response factor 18 
 gma-u.5   100803911   auxin response factor 9 
 gma-u.5   100799088   auxin response factor 9 
 vvi-u.5   100265555   auxin response factor 18 
 vvi-u.5   100247833   auxin response factor 9 
 ppo-u.5   18096378   auxin response factor 18 
 ppo-u.5   7497860   auxin response factor 9 
 ppo-u.5   7467068   auxin response factor 9 
 mtr-u.5   25500666   auxin response factor 18 
 mtr-u.5   25498520   auxin response factor 9 
 mtr-u.5   11412612   auxin response factor 9 
 sly-u.5   ARF18   auxin response factor 18 
 sly-u.5   ARF9   auxin response factor 9 
 sly-u.5   ARF12   auxin response factor 12 
 sot-r.1   102586095   auxin response factor 18 
 sot-r.1   102605272   auxin response factor 9 
 sot-r.1   102582092   auxin response factor 9-like 
 nta-r.1   107799406   auxin response factor 9 
 nta-r.1   107795884   auxin response factor 18 
 nta-r.1   107771982   auxin response factor 18 

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Top 50 coexpressed genes to ARF9 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ARF9 (ath-m.4.tis coexpression data)

CoexMap"828498"


athARF9 | Entrez gene ID : 828498      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta cre hvu tae bdi osa zma sbi
Paralog 11 3 3 3 3 3 2 3 3 3 3 3 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04075 [list] [network] Plant hormone signal transduction (433 genes)
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031706.1 [sequence] [blastp]
NP_194129.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001031706.1)
nucl 9,  cyto 1,  golg 1  (predict for NP_194129.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001031706.1)
other 7  (predict for NP_194129.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
ARF9
ath-u.5
for
ARF9
ath-r.7
for
ARF9
ath-m.9
for
ARF9
ath-e.2
for
ARF9
ath-m.4.bio
for
ARF9
ath-m.4.hor
for
ARF9
ath-m.4.lig
for
ARF9
ath-m.4.str
for
ARF9
ath-u.5
for
ARF11
ath-u.5
for
ARF18
bra-r.6
for
ARF9-2
bra-r.6
for
ARF9-1
bra-r.6
for
ARF18-2
bna-r.1
for
106450494
bna-r.1
for
106396799
bna-r.1
for
106414111
ghi-r.1
for
107904460
ghi-r.1
for
107924220
ghi-r.1
for
107951171
cit-r.1
for
102627440
cit-r.1
for
102627122
cit-r.1
for
102625615
gma-u.5
for
100820503
gma-u.5
for
100803911
gma-u.5
for
100799088
vvi-u.5
for
100265555
vvi-u.5
for
100247833
ppo-u.5
for
18096378
ppo-u.5
for
7497860
ppo-u.5
for
7467068
mtr-u.5
for
25500666
mtr-u.5
for
25498520
mtr-u.5
for
11412612
sly-u.5
for
ARF18
sly-u.5
for
ARF9
sly-u.5
for
ARF12
sot-r.1
for
102586095
sot-r.1
for
102605272
sot-r.1
for
102582092
nta-r.1
for
107799406
nta-r.1
for
107795884
nta-r.1
for
107771982


Ortholog ID: 2715
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta
Symbol ARF9 ARF11 ARF18 ARF9-1 ARF18-2 ARF11 LOC106450494 LOC106414111 LOC106414365 LOC107945001 LOC107954481 LOC107924260 LOC102627440 LOC102627122 LOC102625615 LOC100820503 LOC100803911 LOC100780060 LOC100265555 LOC100247833 LOC7497860 LOC7467068 LOC18105244 LOC25500666 LOC25498520 LOC11412612 ARF18 ARF9 ARF12 LOC102586095 LOC102605272 LOC102582092 LOC107799406 LOC107795884 LOC107771982
Function* auxin response factor 9 auxin response factor 11 auxin response factor 18 auxin response factor 9 auxin response factor 18 auxin response factor 11 auxin response factor 11 auxin response factor 9 auxin response factor 11 auxin response factor 18 auxin response factor 18 auxin response factor 9 auxin response factor 18-like auxin response factor 18 auxin response factor 9 auxin response factor 18 auxin response factor 9 auxin response factor 9 auxin response factor 18 auxin response factor 9 auxin response factor 9 auxin response factor 9 auxin response factor 18 auxin response factor 18 auxin response factor 9 auxin response factor 9 auxin response factor 18 auxin response factor 9 auxin response factor 12 auxin response factor 18 auxin response factor 9 auxin response factor 9-like auxin response factor 9 auxin response factor 18 auxin response factor 18
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
bra04814 Motor proteins 2
bra03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 8
bna04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 8
bna04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
ghi00904 Diterpenoid biosynthesis 2
ghi00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
ghi00220 Arginine biosynthesis 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00062 Fatty acid elongation 2
cit01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 5
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 6
mtr00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 5
sot00260 Glycine, serine and threonine metabolism 3
sot00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828498 819264 825356 103861608 103862810 103866459 106450494 106414111 106414365 107945001 107954481 107924260 102627440 102627122 102625615 100820503 100803911 100780060 100265555 100247833 7497860 7467068 18105244 25500666 25498520 11412612 101255336 100736445 100736462 102586095 102605272 102582092 107799406 107795884 107771982
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