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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   ROPGEF1   rho guanyl-nucleotide exchange factor 1 
 ath-u.5   ROPGEF1   rho guanyl-nucleotide exchange factor 1 
 ath-r.7   ROPGEF1   rho guanyl-nucleotide exchange factor 1 
 ath-m.9   ROPGEF1   rho guanyl-nucleotide exchange factor 1 
 ath-e.2   ROPGEF1   rho guanyl-nucleotide exchange factor 1 
 ath-m.4.bio   ROPGEF1   rho guanyl-nucleotide exchange factor 1 
 ath-m.4.hor   ROPGEF1   rho guanyl-nucleotide exchange factor 1 
 ath-m.4.lig   ROPGEF1   rho guanyl-nucleotide exchange factor 1 
 ath-m.4.str   ROPGEF1   rho guanyl-nucleotide exchange factor 1 
 bna-r.1   106450583   rop guanine nucleotide exchange factor 1-like 
 bna-r.1   106410728   rop guanine nucleotide exchange factor 1-like 
 ghi-r.1   107908635   rop guanine nucleotide exchange factor 1 
 ghi-r.1   107920259   rop guanine nucleotide exchange factor 1 
 ghi-r.1   107922346   rop guanine nucleotide exchange factor 1 
 cit-r.1   102630376   rop guanine nucleotide exchange factor 1 
 cit-r.1   102627140   rop guanine nucleotide exchange factor 1 
 gma-u.5   100789706   rop guanine nucleotide exchange factor 1 
 gma-u.5   100819455   rop guanine nucleotide exchange factor 1 
 vvi-u.5   100245496   rop guanine nucleotide exchange factor 1 
 vvi-u.5   100260682   rop guanine nucleotide exchange factor 1 
 ppo-u.5   7472097   rop guanine nucleotide exchange factor 1 
 ppo-u.5   7494665   rop guanine nucleotide exchange factor 1 
 mtr-u.5   25492858   rop guanine nucleotide exchange factor 1 
 sly-u.5   101251179   rop guanine nucleotide exchange factor 1-like 
 sly-u.5   101249771   rop guanine nucleotide exchange factor 1 
 sot-r.1   102599896   rop guanine nucleotide exchange factor 1 
 sot-r.1   102586885   rop guanine nucleotide exchange factor 1-like 
 nta-r.1   107824064   rop guanine nucleotide exchange factor 1-like 
 nta-r.1   107759819   rop guanine nucleotide exchange factor 1 
 nta-r.1   107770816   rop guanine nucleotide exchange factor 1 
 osa-u.5   4347751   rop guanine nucleotide exchange factor 1 
 zma-u.5   100194277   uncharacterized LOC100194277 
 zma-u.5   100285947   pollen-specific kinase partner protein 
 tae-r.2   123112929   rop guanine nucleotide exchange factor 1 
 tae-r.2   123122449   rop guanine nucleotide exchange factor 1 
 tae-r.2   123104666   rop guanine nucleotide exchange factor 1 
 hvu-r.1   123451773   rop guanine nucleotide exchange factor 1 
 sbi-r.1   8063340   rop guanine nucleotide exchange factor 1 
 bdi-r.1   100844022   rop guanine nucleotide exchange factor 1 

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Top 50 coexpressed genes to ROPGEF1 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ROPGEF1 (ath-m.4.tis coexpression data)

CoexMap"830000"


athROPGEF1 | Entrez gene ID : 830000      
Species ath bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bra
Paralog 9 2 3 2 2 2 2 1 2 2 3 1 2 3 1 1 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:2000012 [list] [network] regulation of auxin polar transport  (39 genes)  IMP  
GO:0080092 [list] [network] regulation of pollen tube growth  (40 genes)  IGI  
GO:0009860 [list] [network] pollen tube growth  (151 genes)  IMP  
GO CC
GO:0016324 [list] [network] apical plasma membrane  (32 genes)  IDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005085 [list] [network] guanyl-nucleotide exchange factor activity  (24 genes)  IDA IMP  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_195556.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto_nucl 4,  cyto 1,  chlo 1,  plas 1,  cysk 1,  golg 1,  golg_plas 1,  cysk_plas 1  (predict for NP_195556.1)
Subcellular
localization
TargetP
other 7,  chlo 6  (predict for NP_195556.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
ROPGEF1
ath-u.5
for
ROPGEF1
ath-r.7
for
ROPGEF1
ath-m.9
for
ROPGEF1
ath-e.2
for
ROPGEF1
ath-m.4.bio
for
ROPGEF1
ath-m.4.hor
for
ROPGEF1
ath-m.4.lig
for
ROPGEF1
ath-m.4.str
for
ROPGEF1
bna-r.1
for
106450583
bna-r.1
for
106410728
ghi-r.1
for
107908635
ghi-r.1
for
107920259
ghi-r.1
for
107922346
cit-r.1
for
102630376
cit-r.1
for
102627140
gma-u.5
for
100789706
gma-u.5
for
100819455
vvi-u.5
for
100245496
vvi-u.5
for
100260682
ppo-u.5
for
7472097
ppo-u.5
for
7494665
mtr-u.5
for
25492858
sly-u.5
for
101251179
sly-u.5
for
101249771
sot-r.1
for
102599896
sot-r.1
for
102586885
nta-r.1
for
107824064
nta-r.1
for
107759819
nta-r.1
for
107770816
osa-u.5
for
4347751
zma-u.5
for
100194277
zma-u.5
for
100285947
tae-r.2
for
123112929
tae-r.2
for
123122449
tae-r.2
for
123104666
hvu-r.1
for
123451773
sbi-r.1
for
8063340
bdi-r.1
for
100844022


Ortholog ID: 5567
Species ath bna bna ghi ghi ghi cit cit gma gma vvi vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol ROPGEF1 LOC106450583 LOC106410728 LOC107908635 LOC107905636 LOC107937554 LOC102630376 LOC102627140 LOC100789706 LOC100819455 LOC100245496 LOC100260682 LOC7494665 LOC7490608 LOC25492858 LOC101251179 LOC101249771 LOC102599896 LOC102586885 LOC107824064 LOC107759819 LOC107770816 LOC4347751 LOC100194277 LOC100285947 LOC123112929 LOC123122449 LOC123104666 LOC123451773 LOC8063340 LOC100844022
Function* rho guanyl-nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1-like rop guanine nucleotide exchange factor 1-like rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1-like rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1-like rop guanine nucleotide exchange factor 1-like rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 uncharacterized LOC100194277 pollen-specific kinase partner protein rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1 rop guanine nucleotide exchange factor 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 5
ghi00500 Starch and sucrose metabolism 4
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04144 Endocytosis 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 2
nta00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae04382 Cornified envelope formation 3
tae04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 2
tae04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830000 106450583 106410728 107908635 107905636 107937554 102630376 102627140 100789706 100819455 100245496 100260682 7494665 7490608 25492858 101251179 101249771 102599896 102586885 107824064 107759819 107770816 4347751 100194277 100285947 123112929 123122449 123104666 123451773 8063340 100844022
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