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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   EMB976   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   EMB976   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-r.7   EMB976   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.9   EMB976   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-e.2   EMB976   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.bio   EMB976   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.hor   EMB976   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.lig   EMB976   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.str   EMB976   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103874548   pentatricopeptide repeat-containing protein At5g27270 
 bna-r.1   106410840   pentatricopeptide repeat-containing protein At5g27270 
 bna-r.1   106382241   pentatricopeptide repeat-containing protein At5g27270 
 ghi-r.1   107909060   pentatricopeptide repeat-containing protein At5g27270 
 ghi-r.1   107940248   pentatricopeptide repeat-containing protein At5g27270 
 cit-r.1   102615146   pentatricopeptide repeat-containing protein At5g27270 
 gma-u.5   100818679   pentatricopeptide repeat-containing protein At5g27270 
 vvi-u.5   100261338   pentatricopeptide repeat-containing protein At5g27270 
 ppo-u.5   7469842   pentatricopeptide repeat-containing protein At5g27270 
 mtr-u.5   25501775   pentatricopeptide repeat-containing protein At5g27270 
 sly-u.5   101248463   pentatricopeptide repeat-containing protein At5g27270 
 sot-r.1   102580066   pentatricopeptide repeat-containing protein At5g27270 
 nta-r.1   107797188   pentatricopeptide repeat-containing protein At5g27270-like 
 nta-r.1   107777702   pentatricopeptide repeat-containing protein At5g27270-like 
 osa-u.5   4339890   pentatricopeptide repeat-containing protein At5g27270 
 zma-u.5   100383512   uncharacterized LOC100383512 
 tae-r.2   123145746   pentatricopeptide repeat-containing protein At5g27270 
 tae-r.2   123138492   pentatricopeptide repeat-containing protein At5g27270 
 hvu-r.1   123424697   pentatricopeptide repeat-containing protein At5g27270 
 sbi-r.1   8067916   pentatricopeptide repeat-containing protein At5g27270 
 bdi-r.1   100835564   pentatricopeptide repeat-containing protein At5g27270 

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Top 50 coexpressed genes to EMB976 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB976 (ath-m.4.tis coexpression data)

CoexMap"832785"


athEMB976 | Entrez gene ID : 832785      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010239 [list] [network] chloroplast mRNA processing  (12 genes)  IMP  
GO:0000373 [list] [network] Group II intron splicing  (28 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_001331483.1 [sequence] [blastp]
NP_001331484.1 [sequence] [blastp]
NP_001331485.1 [sequence] [blastp]
NP_001331486.1 [sequence] [blastp]
NP_198079.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001331483.1)
chlo 9,  mito 1  (predict for NP_001331484.1)
chlo 4,  cyto 4,  nucl 1  (predict for NP_001331485.1)
chlo 4,  cyto 4,  nucl 1  (predict for NP_001331486.1)
chlo 9,  mito 1  (predict for NP_198079.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001331483.1)
chlo 8  (predict for NP_001331484.1)
other 8  (predict for NP_001331485.1)
other 8  (predict for NP_001331486.1)
chlo 8  (predict for NP_198079.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
EMB976
ath-u.5
for
EMB976
ath-r.7
for
EMB976
ath-m.9
for
EMB976
ath-e.2
for
EMB976
ath-m.4.bio
for
EMB976
ath-m.4.hor
for
EMB976
ath-m.4.lig
for
EMB976
ath-m.4.str
for
EMB976
bra-r.6
for
103874548
bna-r.1
for
106410840
bna-r.1
for
106382241
ghi-r.1
for
107909060
ghi-r.1
for
107940248
cit-r.1
for
102615146
gma-u.5
for
100818679
vvi-u.5
for
100261338
ppo-u.5
for
7469842
mtr-u.5
for
25501775
sly-u.5
for
101248463
sot-r.1
for
102580066
nta-r.1
for
107797188
nta-r.1
for
107777702
osa-u.5
for
4339890
zma-u.5
for
100383512
tae-r.2
for
123145746
tae-r.2
for
123138492
hvu-r.1
for
123424697
sbi-r.1
for
8067916
bdi-r.1
for
100835564


Ortholog ID: 10960
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol EMB976 LOC103874548 LOC106410840 LOC106382241 LOC107909060 LOC107940248 LOC102615146 LOC100818679 LOC100261338 LOC7469842 LOC25501775 LOC101248463 LOC102580066 LOC107797188 LOC107777702 LOC4339890 LOC100383512 LOC123145746 LOC123138492 LOC123128615 LOC123424697 LOC8067916 LOC100835564
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270-like pentatricopeptide repeat-containing protein At5g27270-like pentatricopeptide repeat-containing protein At5g27270 uncharacterized LOC100383512 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270 pentatricopeptide repeat-containing protein At5g27270
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 2
ghi00230 Purine metabolism 2
ghi00232 Caffeine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 2
ghi00531 Glycosaminoglycan degradation 2
ghi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00906 Carotenoid biosynthesis 2
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
zma00970 Aminoacyl-tRNA biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 4
tae00260 Glycine, serine and threonine metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
tae00670 One carbon pool by folate 3
tae00785 Lipoic acid metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832785 103874548 106410840 106382241 107909060 107940248 102615146 100818679 100261338 7469842 25501775 101248463 102580066 107797188 107777702 4339890 100383512 123145746 123138492 123128615 123424697 8067916 100835564
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