ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.tis	CRK42	cysteine-rich RLK (RECEPTOR-like protein kinase) 42
ath-u.5	CRK42	cysteine-rich RLK (RECEPTOR-like protein kinase) 42
ath-r.7	CRK42	cysteine-rich RLK (RECEPTOR-like protein kinase) 42
ath-m.9	CRK42	cysteine-rich RLK (RECEPTOR-like protein kinase) 42
ath-e.2	CRK42	cysteine-rich RLK (RECEPTOR-like protein kinase) 42
ath-m.4.bio	CRK42	cysteine-rich RLK (RECEPTOR-like protein kinase) 42
ath-m.4.hor	CRK42	cysteine-rich RLK (RECEPTOR-like protein kinase) 42
ath-m.4.lig	CRK42	cysteine-rich RLK (RECEPTOR-like protein kinase) 42
ath-m.4.str	CRK42	cysteine-rich RLK (RECEPTOR-like protein kinase) 42
ath-u.5	CRK2	cysteine-rich RLK (RECEPTOR-like protein kinase) 2
ath-u.5	CRK3	cysteine-rich RLK (RECEPTOR-like protein kinase) 3
bra-r.6	103852658	cysteine-rich receptor-like protein kinase 2
bra-r.6	103850172	cysteine-rich receptor-like protein kinase 42
bna-r.1	111212664	cysteine-rich receptor-like protein kinase 2
bna-r.1	111212663	cysteine-rich receptor-like protein kinase 3
bna-r.1	111212662	cysteine-rich receptor-like protein kinase 3
ghi-r.1	107903844	cysteine-rich receptor-like protein kinase 2
ghi-r.1	107903843	cysteine-rich receptor-like protein kinase 2
cit-r.1	102629488	cysteine-rich receptor-like protein kinase 3
cit-r.1	102628493	cysteine-rich receptor-like protein kinase 42
cit-r.1	102629195	cysteine-rich receptor-like protein kinase 2
gma-u.5	CRK64	cysteine-rich receptor-like protein kinase
gma-u.5	CRK11	cysteine-rich receptor-like protein kinase
gma-u.5	CRK6	cysteine-rich receptor-like protein kinase
vvi-u.5	100241439	cysteine-rich receptor-like protein kinase 2
vvi-u.5	100268147	cysteine-rich receptor-like protein kinase 42
vvi-u.5	100253407	cysteine-rich receptor-like protein kinase 3
ppo-u.5	18102402	cysteine-rich receptor-like protein kinase 3
ppo-u.5	18102401	cysteine-rich receptor-like protein kinase 2
ppo-u.5	7496830	cysteine-rich receptor-like protein kinase 42
mtr-u.5	11408630	cysteine-rich receptor-like protein kinase 2
sly-u.5	101250536	cysteine-rich receptor-like protein kinase 2
sly-u.5	CRK1	cysteine-rich receptor-like protein kinase 1
sot-r.1	102592909	cysteine-rich receptor-like protein kinase 2
sot-r.1	102580099	cysteine-rich receptor-like protein kinase 2
sot-r.1	102587710	cysteine-rich receptor-like protein kinase 2
nta-r.1	107796473	cysteine-rich receptor-like protein kinase 42
nta-r.1	107787393	cysteine-rich receptor-like protein kinase 3
osa-u.5	4326185	cysteine-rich receptor-like protein kinase 2
osa-u.5	4337704	cysteine-rich receptor-like protein kinase 2
zma-u.5	103630323	cysteine-rich receptor-like protein kinase 2
zma-u.5	103652629	cysteine-rich receptor-like protein kinase 2
zma-u.5	100384005	uncharacterized LOC100384005
tae-r.2	123057912	cysteine-rich receptor-like protein kinase 2
tae-r.2	123165265	cysteine-rich receptor-like protein kinase 2
tae-r.2	123087503	cysteine-rich receptor-like protein kinase 2
hvu-r.1	123442827	cysteine-rich receptor-like protein kinase 2
hvu-r.1	123406439	cysteine-rich receptor-like protein kinase 2
sbi-r.1	8075009	cysteine-rich receptor-like protein kinase 2
sbi-r.1	8068176	cysteine-rich receptor-like protein kinase 2

Top 50 coexpressed genes to CRK42 (ath-m.4.tis coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CRK42 (ath-m.4.tis coexpression data)

CoexMap"834036"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016310 [list] [network] phosphorylation

(529 genes)

ISS

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

GO:0004672 [list] [network] protein kinase activity	(737 genes)	IEA
GO:0016301 [list] [network] kinase activity	(1055 genes)	ISS

Protein

NP_001331670.1 [sequence] [blastp]
NP_001331671.1 [sequence] [blastp]
NP_198854.3 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, extr 3, vacu 2, chlo_mito 2	(predict for NP_001331670.1)
extr 4, chlo 3, mito 1, vacu 1	(predict for NP_001331671.1)
chlo 3, extr 3, mito 1, vacu 1, nucl 1, cyto 1, cyto_nucl 1, cyto_mito 1, E.R._vacu 1, mito_plas 1	(predict for NP_198854.3)

Subcellular
localization
TargetP

scret 6, mito 3	(predict for NP_001331670.1)
scret 6, mito 3	(predict for NP_001331671.1)
scret 6, mito 3	(predict for NP_198854.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.tis for CRK42	ath-u.5 for CRK42	ath-r.7 for CRK42	ath-m.9 for CRK42	ath-e.2 for CRK42	ath-m.4.bio for CRK42	ath-m.4.hor for CRK42	ath-m.4.lig for CRK42	ath-m.4.str for CRK42	ath-u.5 for CRK2	ath-u.5 for CRK3	bra-r.6 for 103852658	bra-r.6 for 103850172	bna-r.1 for 111212664	bna-r.1 for 111212663	bna-r.1 for 111212662	ghi-r.1 for 107903844	ghi-r.1 for 107903843	cit-r.1 for 102629488	cit-r.1 for 102628493	cit-r.1 for 102629195	gma-u.5 for CRK64	gma-u.5 for CRK11	gma-u.5 for CRK6	vvi-u.5 for 100241439	vvi-u.5 for 100268147	vvi-u.5 for 100253407	ppo-u.5 for 18102402	ppo-u.5 for 18102401	ppo-u.5 for 7496830	mtr-u.5 for 11408630	sly-u.5 for 101250536	sly-u.5 for CRK1	sot-r.1 for 102592909	sot-r.1 for 102580099	sot-r.1 for 102587710	nta-r.1 for 107796473	nta-r.1 for 107787393	osa-u.5 for 4326185	osa-u.5 for 4337704	zma-u.5 for 103630323	zma-u.5 for 103652629	zma-u.5 for 100384005	tae-r.2 for 123057912	tae-r.2 for 123165265	tae-r.2 for 123087503	hvu-r.1 for 123442827	hvu-r.1 for 123406439	sbi-r.1 for 8075009	sbi-r.1 for 8068176

Ortholog

Ortholog ID: 698

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

Symbol

CRK2

CRK3

CRK6

CRK63

CRK1

Function^*

cysteine-rich RLK (RECEPTOR-like protein kinase) 2

cysteine-rich RLK (RECEPTOR-like protein kinase) 3

cysteine-rich receptor-like protein kinase 3