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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   DCI1   delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 
 ath-u.5   DCI1   delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 
 ath-r.7   DCI1   delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 
 ath-m.9   DCI1   delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 
 ath-e.2   DCI1   delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 
 ath-m.4.bio   DCI1   delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 
 ath-m.4.hor   DCI1   delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 
 ath-m.4.lig   DCI1   delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 
 ath-m.4.str   DCI1   delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 
 bra-r.6   103839250   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 bna-r.1   106437370   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 bna-r.1   106447057   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 ghi-r.1   107912942   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 ghi-r.1   107919096   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 cit-r.1   102611221   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 gma-u.5   100804855   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like 
 vvi-u.5   100249010   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 ppo-u.5   7460573   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 mtr-u.5   11418463   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 sly-u.5   101255297   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 sot-r.1   102601569   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial 
 nta-r.1   107783788   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 osa-u.5   4327232   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 zma-u.5   103655617   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal-like 
 zma-u.5   100192936   delta3,5-delta2,4-dienoyl-CoA isomerase 
 tae-r.2   123063160   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 tae-r.2   123063162   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 tae-r.2   123072066   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 hvu-r.1   123445285   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 sbi-r.1   8059382   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 bdi-r.1   100829779   delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal 
 cre-r.1   CHLRE_10g463150v5   uncharacterized protein 

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Top 50 coexpressed genes to DCI1 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to DCI1 (ath-m.4.tis coexpression data)

CoexMap"834346"


athDCI1 | Entrez gene ID : 834346      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 1 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04146 [list] [network] Peroxisome (90 genes)
GO BP
GO:0006635 [list] [network] fatty acid beta-oxidation  (24 genes)  IDA  
GO:0009062 [list] [network] fatty acid catabolic process  (30 genes)  TAS  
GO CC
GO:0005777 [list] [network] peroxisome  (313 genes)  HDA IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0051750 [list] [network] delta(3,5)-delta(2,4)-dienoyl-CoA isomerase activity  (1 genes)  IDA IGI  
Protein NP_001078698.1 [sequence] [blastp]
NP_199142.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 2,  plas 1,  cysk_nucl 1  (predict for NP_001078698.1)
nucl 5,  plas 2,  chlo 1,  cyto 1  (predict for NP_199142.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001078698.1)
other 9  (predict for NP_199142.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
DCI1
ath-u.5
for
DCI1
ath-r.7
for
DCI1
ath-m.9
for
DCI1
ath-e.2
for
DCI1
ath-m.4.bio
for
DCI1
ath-m.4.hor
for
DCI1
ath-m.4.lig
for
DCI1
ath-m.4.str
for
DCI1
bra-r.6
for
103839250
bna-r.1
for
106437370
bna-r.1
for
106447057
ghi-r.1
for
107912942
ghi-r.1
for
107919096
cit-r.1
for
102611221
gma-u.5
for
100804855
vvi-u.5
for
100249010
ppo-u.5
for
7460573
mtr-u.5
for
11418463
sly-u.5
for
101255297
sot-r.1
for
102601569
nta-r.1
for
107783788
osa-u.5
for
4327232
zma-u.5
for
103655617
zma-u.5
for
100192936
tae-r.2
for
123063160
tae-r.2
for
123063162
tae-r.2
for
123072066
hvu-r.1
for
123445285
sbi-r.1
for
8059382
bdi-r.1
for
100829779
cre-r.1
for
CHLRE_10g463150v5


Ortholog ID: 9716
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol DCI1 LOC103839250 LOC106437370 LOC106447057 LOC107912942 LOC107919096 LOC102611221 LOC100804855 LOC100249010 LOC7460573 LOC11418463 LOC101255297 LOC102601569 LOC107783788 LOC4327232 LOC103655617 LOC100192936 LOC123063160 LOC123063162 LOC123072066 LOC123445285 LOC8059382 LOC100829779 CHLRE_10g463150v5
Function* delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal-like delta3,5-delta2,4-dienoyl-CoA isomerase delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00071 Fatty acid degradation 5
ath01212 Fatty acid metabolism 4
ath00280 Valine, leucine and isoleucine degradation 3
ath00592 alpha-Linolenic acid metabolism 3
ath00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 2
bra01200 Carbon metabolism 2
bra00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 3
bna00071 Fatty acid degradation 2
bna00280 Valine, leucine and isoleucine degradation 2
bna00310 Lysine degradation 2
bna00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 3
bna00071 Fatty acid degradation 2
bna00280 Valine, leucine and isoleucine degradation 2
bna00310 Lysine degradation 2
bna00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00620 Pyruvate metabolism 2
ghi03060 Protein export 2
ghi03040 Spliceosome 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 5
cit04142 Lysosome 3
cit04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 3
ppo00190 Oxidative phosphorylation 2
ppo04142 Lysosome 2
ppo04145 Phagosome 2
ppo00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 5
mtr00020 Citrate cycle (TCA cycle) 4
mtr01200 Carbon metabolism 4
mtr00785 Lipoic acid metabolism 3
mtr01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot01210 2-Oxocarboxylic acid metabolism 2
sot01230 Biosynthesis of amino acids 2
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04146 Peroxisome 3
zma00562 Inositol phosphate metabolism 2
zma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04146 Peroxisome 3
zma01200 Carbon metabolism 3
zma00020 Citrate cycle (TCA cycle) 2
zma00270 Cysteine and methionine metabolism 2
zma00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 5
tae00730 Thiamine metabolism 2
tae00740 Riboflavin metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 6
tae00730 Thiamine metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 2
hvu04146 Peroxisome 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 6
cre04146 Peroxisome 4
cre00071 Fatty acid degradation 3
cre01212 Fatty acid metabolism 3
cre00630 Glyoxylate and dicarboxylate metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834346 103839250 106437370 106447057 107912942 107919096 102611221 100804855 100249010 7460573 11418463 101255297 102601569 107783788 4327232 103655617 100192936 123063160 123063162 123072066 123445285 8059382 100829779 5723984
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