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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   VIP2   VIRE2 interacting protein 2 
 ath-u.5   VIP2   VIRE2 interacting protein 2 
 ath-r.7   VIP2   VIRE2 interacting protein 2 
 ath-m.9   VIP2   VIRE2 interacting protein 2 
 ath-e.2   VIP2   VIRE2 interacting protein 2 
 ath-m.4.bio   VIP2   VIRE2 interacting protein 2 
 ath-m.4.hor   VIP2   VIRE2 interacting protein 2 
 ath-m.4.lig   VIP2   VIRE2 interacting protein 2 
 ath-m.4.str   VIP2   VIRE2 interacting protein 2 
 ath-u.5   AT1G07705   NOT2 / NOT3 / NOT5 family 
 bra-r.6   103851558   probable NOT transcription complex subunit VIP2 
 bra-r.6   103856612   probable NOT transcription complex subunit VIP2 
 bra-r.6   103871522   probable NOT transcription complex subunit VIP2 
 bna-r.1   106441122   probable NOT transcription complex subunit VIP2 
 bna-r.1   106385420   probable NOT transcription complex subunit VIP2 
 bna-r.1   106436229   probable NOT transcription complex subunit VIP2 
 ghi-r.1   107938436   probable NOT transcription complex subunit VIP2 
 ghi-r.1   121212693   probable NOT transcription complex subunit VIP2 
 ghi-r.1   107959074   probable NOT transcription complex subunit VIP2 
 cit-r.1   102577999   probable NOT transcription complex subunit VIP2 
 gma-u.5   100807026   probable NOT transcription complex subunit VIP2 
 gma-u.5   100806559   probable NOT transcription complex subunit VIP2 
 gma-u.5   100783662   probable NOT transcription complex subunit VIP2 
 vvi-u.5   109123481   probable NOT transcription complex subunit VIP2 
 vvi-u.5   100263354   probable NOT transcription complex subunit VIP2 
 vvi-u.5   100248449   probable NOT transcription complex subunit VIP2 
 ppo-u.5   18095311   probable NOT transcription complex subunit VIP2 
 ppo-u.5   18107269   probable NOT transcription complex subunit VIP2 
 mtr-u.5   11418070   probable NOT transcription complex subunit VIP2 
 mtr-u.5   25492462   probable NOT transcription complex subunit VIP2 
 sly-u.5   101258724   probable NOT transcription complex subunit VIP2 
 sly-u.5   101256781   probable NOT transcription complex subunit VIP2 
 sot-r.1   102579065   probable NOT transcription complex subunit VIP2 
 sot-r.1   102585273   probable NOT transcription complex subunit VIP2 
 nta-r.1   107824757   putative NOT transcription complex subunit VIP2 
 nta-r.1   107820585   putative NOT transcription complex subunit VIP2 
 nta-r.1   107813402   putative NOT transcription complex subunit VIP2 
 osa-u.5   4330931   probable NOT transcription complex subunit VIP2 
 osa-u.5   4334027   probable NOT transcription complex subunit VIP2 
 osa-u.5   4339144   probable NOT transcription complex subunit VIP2 
 zma-u.5   100381661   uncharacterized LOC100381661 
 zma-u.5   100281429   uncharacterized LOC100281429 
 tae-r.2   123182392   probable NOT transcription complex subunit VIP2 
 tae-r.2   123140151   probable NOT transcription complex subunit VIP2 
 tae-r.2   123060299   probable NOT transcription complex subunit VIP2 
 hvu-r.1   123406341   probable NOT transcription complex subunit VIP2 
 hvu-r.1   123399853   probable NOT transcription complex subunit VIP2 
 sbi-r.1   8064155   probable NOT transcription complex subunit VIP2 
 sbi-r.1   8081948   probable NOT transcription complex subunit VIP2 
 bdi-r.1   100843655   probable NOT transcription complex subunit VIP2 
 bdi-r.1   100844143   probable NOT transcription complex subunit VIP2 
 cre-r.1   CHLRE_06g309050v5   uncharacterized protein 

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Top 50 coexpressed genes to VIP2 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VIP2 (ath-m.4.tis coexpression data)

CoexMap"836092"


athVIP2 | Entrez gene ID : 836092      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 1 3 3 2 2 2 2 3 3 2 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03018 [list] [network] RNA degradation (114 genes)
GO BP
GO:0015074 [list] [network] DNA integration  (4 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001329954.1 [sequence] [blastp]
NP_001329955.1 [sequence] [blastp]
NP_568912.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1  (predict for NP_001329954.1)
nucl 8,  chlo 1  (predict for NP_001329955.1)
nucl 8,  chlo 1  (predict for NP_568912.2)
Subcellular
localization
TargetP
chlo 5,  other 5  (predict for NP_001329954.1)
chlo 5,  other 5  (predict for NP_001329955.1)
chlo 5,  other 5  (predict for NP_568912.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
VIP2
ath-u.5
for
VIP2
ath-r.7
for
VIP2
ath-m.9
for
VIP2
ath-e.2
for
VIP2
ath-m.4.bio
for
VIP2
ath-m.4.hor
for
VIP2
ath-m.4.lig
for
VIP2
ath-m.4.str
for
VIP2
ath-u.5
for
AT1G07705
bra-r.6
for
103851558
bra-r.6
for
103856612
bra-r.6
for
103871522
bna-r.1
for
106441122
bna-r.1
for
106385420
bna-r.1
for
106436229
ghi-r.1
for
107938436
ghi-r.1
for
121212693
ghi-r.1
for
107959074
cit-r.1
for
102577999
gma-u.5
for
100807026
gma-u.5
for
100806559
gma-u.5
for
100783662
vvi-u.5
for
109123481
vvi-u.5
for
100263354
vvi-u.5
for
100248449
ppo-u.5
for
18095311
ppo-u.5
for
18107269
mtr-u.5
for
11418070
mtr-u.5
for
25492462
sly-u.5
for
101258724
sly-u.5
for
101256781
sot-r.1
for
102579065
sot-r.1
for
102585273
nta-r.1
for
107824757
nta-r.1
for
107820585
nta-r.1
for
107813402
osa-u.5
for
4330931
osa-u.5
for
4334027
osa-u.5
for
4339144
zma-u.5
for
100381661
zma-u.5
for
100281429
tae-r.2
for
123182392
tae-r.2
for
123140151
tae-r.2
for
123060299
hvu-r.1
for
123406341
hvu-r.1
for
123399853
sbi-r.1
for
8064155
sbi-r.1
for
8081948
bdi-r.1
for
100843655
bdi-r.1
for
100844143
cre-r.1
for
CHLRE_06g309050v5


Ortholog ID: 2513
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol VIP2 AT1G07705 LOC103851558 LOC103856612 LOC103871522 LOC106385420 LOC106436229 LOC106415647 LOC121212693 LOC107959074 LOC107931419 LOC102577999 LOC100807026 LOC100806559 LOC100783662 LOC109123481 LOC100263354 LOC100248449 LOC18095311 LOC18107269 LOC11418070 LOC25492462 LOC101258724 LOC101256781 LOC102579065 LOC102585273 LOC107824757 LOC107820585 LOC107813402 LOC4330931 LOC4334027 LOC4339144 LOC100381661 LOC100281429 LOC123182392 LOC123140151 LOC123137281 LOC123406341 LOC123399853 LOC8064155 LOC8081948 LOC100843655 LOC100844143 CHLRE_06g309050v5
Function* VIRE2 interacting protein 2 NOT2 / NOT3 / NOT5 family probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 putative NOT transcription complex subunit VIP2 putative NOT transcription complex subunit VIP2 putative NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 uncharacterized LOC100381661 uncharacterized LOC100281429 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 5
ath03040 Spliceosome 3
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
bra00020 Citrate cycle (TCA cycle) 2
bra01200 Carbon metabolism 2
bra00541 Biosynthesis of various nucleotide sugars 2
bra01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma04120 Ubiquitin mediated proteolysis 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 5
ppo00510 N-Glycan biosynthesis 4
ppo00513 Various types of N-glycan biosynthesis 4
ppo00020 Citrate cycle (TCA cycle) 3
ppo01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
mtr03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 3
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03250 Viral life cycle - HIV-1 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03030 DNA replication 3
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03410 Base excision repair 2
hvu03420 Nucleotide excision repair 2
hvu03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
bdi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre03018 RNA degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836092 837284 103851558 103856612 103871522 106385420 106436229 106415647 121212693 107959074 107931419 102577999 100807026 100806559 100783662 109123481 100263354 100248449 18095311 18107269 11418070 25492462 101258724 101256781 102579065 102585273 107824757 107820585 107813402 4330931 4334027 4339144 100381661 100281429 123182392 123140151 123137281 123406341 123399853 8064155 8081948 100843655 100844143 5716830
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