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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   CYCT1;3   cyclin T 1;3 
 ath-u.5   CYCT1;3   cyclin T 1;3 
 ath-r.7   CYCT1;3   cyclin T 1;3 
 ath-m.9   CYCT1;3   cyclin T 1;3 
 ath-e.2   CYCT1;3   cyclin T 1;3 
 ath-m.4.bio   CYCT1;3   cyclin T 1;3 
 ath-m.4.hor   CYCT1;3   cyclin T 1;3 
 ath-m.4.lig   CYCT1;3   cyclin T 1;3 
 ath-m.4.str   CYCT1;3   cyclin T 1;3 
 ath-u.5   CYCT1;2   Cyclin family protein 
 ath-u.5   CYCT1;4   Cyclin family protein 
 ath-u.5   AT5G45190   Cyclin family protein 
 bra-r.6   103857462   cyclin-T1-2 
 bra-r.6   103827811   cyclin-T1-5 
 bra-r.6   103857507   cyclin-T1-4 
 bna-r.1   106377094   cyclin-T1-4 
 bna-r.1   125575006   cyclin-T1-4-like 
 ghi-r.1   121203542   cyclin-T1-4 
 ghi-r.1   121203043   cyclin-T1-5 
 ghi-r.1   107957940   cyclin-T1-3 
 cit-r.1   102615961   cyclin-T1-5 
 cit-r.1   102620815   cyclin-T1-3-like 
 gma-u.5   100808446   cyclin-T1-5 
 gma-u.5   100778842   cyclin-T1-5-like 
 gma-u.5   100780279   cyclin-T1-3 
 vvi-u.5   100266147   cyclin-T1-3 
 vvi-u.5   100265067   cyclin-T1-5 
 vvi-u.5   100256429   cyclin-T1-3 
 ppo-u.5   7497532   cyclin-T1-4 
 ppo-u.5   7492107   cyclin-T1-3 
 ppo-u.5   7479725   cyclin-T1-3 
 mtr-u.5   11444662   cyclin-T1-3 
 mtr-u.5   11416403   cyclin-T1-5 
 sly-u.5   101260979   cyclin-T1-3 
 sly-u.5   101250904   cyclin-T1-3 
 sot-r.1   102605502   cyclin-T1-4-like 
 sot-r.1   102600355   cyclin-T1-3-like 
 nta-r.1   107785184   cyclin-T1-3-like 
 nta-r.1   107766618   cyclin-T1-3 
 nta-r.1   107764485   cyclin-T1-3-like 
 osa-u.5   4328207   cyclin-T1-1 
 osa-u.5   4349827   cyclin-T1-3-like 
 osa-u.5   4352229   cyclin-T1-4-like 
 zma-u.5   103626584   cyclin-T1-1 
 zma-u.5   103630860   cyclin-T1-3 
 zma-u.5   103654263   protein trichome birefringence-like 28 
 tae-r.2   123091478   cyclin-T1-3 
 tae-r.2   123045775   cyclin-T1-3 
 tae-r.2   123086514   cyclin-T1-3 
 hvu-r.1   123448034   cyclin-T1-3-like 
 hvu-r.1   123448032   cyclin-T1-3-like 
 hvu-r.1   123427030   cyclin-T1-3-like 
 sbi-r.1   8082147   cyclin-T1-4 
 sbi-r.1   8064072   cyclin-T1-4 
 sbi-r.1   8071073   cyclin-T1-3 
 bdi-r.1   100845488   cyclin-T1-4 
 bdi-r.1   100832981   cyclin-T1-1 
 bdi-r.1   100829376   cyclin-T1-3 
 cre-r.1   CHLRE_14g613900v5   uncharacterized protein 

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Top 50 coexpressed genes to CYCT1;3 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CYCT1;3 (ath-m.4.tis coexpression data)

CoexMap"839655"


athCYCT1;3 | Entrez gene ID : 839655      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 2 3 2 3 3 3 2 2 2 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03250 [list] [network] Viral life cycle - HIV-1 (39 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001321314.1 [sequence] [blastp]
NP_001321315.1 [sequence] [blastp]
NP_001321316.1 [sequence] [blastp]
NP_001321317.1 [sequence] [blastp]
NP_001321318.1 [sequence] [blastp]
NP_174084.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  chlo 1,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_001321314.1)
mito 5,  chlo 1,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_001321315.1)
nucl 7,  cyto 2  (predict for NP_001321316.1)
mito 5,  chlo 1,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_001321317.1)
mito 5,  chlo 1,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_001321318.1)
nucl 8,  cyto 2  (predict for NP_174084.1)
Subcellular
localization
TargetP
mito 6,  other 3  (predict for NP_001321314.1)
mito 6,  other 3  (predict for NP_001321315.1)
other 6,  mito 5  (predict for NP_001321316.1)
mito 6,  other 3  (predict for NP_001321317.1)
mito 6,  other 3  (predict for NP_001321318.1)
other 6,  mito 5  (predict for NP_174084.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
CYCT1;3
ath-u.5
for
CYCT1;3
ath-r.7
for
CYCT1;3
ath-m.9
for
CYCT1;3
ath-e.2
for
CYCT1;3
ath-m.4.bio
for
CYCT1;3
ath-m.4.hor
for
CYCT1;3
ath-m.4.lig
for
CYCT1;3
ath-m.4.str
for
CYCT1;3
ath-u.5
for
CYCT1;2
ath-u.5
for
CYCT1;4
ath-u.5
for
AT5G45190
bra-r.6
for
103857462
bra-r.6
for
103827811
bra-r.6
for
103857507
bna-r.1
for
106377094
bna-r.1
for
125575006
ghi-r.1
for
121203542
ghi-r.1
for
121203043
ghi-r.1
for
107957940
cit-r.1
for
102615961
cit-r.1
for
102620815
gma-u.5
for
100808446
gma-u.5
for
100778842
gma-u.5
for
100780279
vvi-u.5
for
100266147
vvi-u.5
for
100265067
vvi-u.5
for
100256429
ppo-u.5
for
7497532
ppo-u.5
for
7492107
ppo-u.5
for
7479725
mtr-u.5
for
11444662
mtr-u.5
for
11416403
sly-u.5
for
101260979
sly-u.5
for
101250904
sot-r.1
for
102605502
sot-r.1
for
102600355
nta-r.1
for
107785184
nta-r.1
for
107766618
nta-r.1
for
107764485
osa-u.5
for
4328207
osa-u.5
for
4349827
osa-u.5
for
4352229
zma-u.5
for
103626584
zma-u.5
for
103630860
zma-u.5
for
103654263
tae-r.2
for
123091478
tae-r.2
for
123045775
tae-r.2
for
123086514
hvu-r.1
for
123448034
hvu-r.1
for
123448032
hvu-r.1
for
123427030
sbi-r.1
for
8082147
sbi-r.1
for
8064072
sbi-r.1
for
8071073
bdi-r.1
for
100845488
bdi-r.1
for
100832981
bdi-r.1
for
100829376
cre-r.1
for
CHLRE_14g613900v5


Ortholog ID: 936
Species ath ath ath bra bra bna bna ghi ghi ghi cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol CYCT1;3 CYCT1;2 CYCT1;4 LOC103834124 LOC103853610 LOC106358030 LOC106425346 LOC121203542 LOC121203043 LOC107891752 LOC102615961 LOC102620815 LOC100778842 LOC100802312 LOC100803349 LOC100266147 LOC100265067 LOC100256429 LOC7497532 LOC7492107 LOC7456334 LOC11444662 LOC11416403 LOC101260979 LOC101250904 LOC102605502 LOC102600355 LOC107785184 LOC107766618 LOC107764485 LOC4328207 LOC4349827 LOC103626584 LOC103630860 LOC103654263 LOC123091478 LOC123091481 LOC123110943 LOC123448032 LOC123427030 LOC123399216 LOC8064072 LOC8071073 LOC8070784 LOC100845488 LOC100832981 LOC100829376 CHLRE_14g613900v5
Function* cyclin T 1;3 Cyclin family protein Cyclin family protein cyclin-T1-4 cyclin-T1-5 cyclin-T1-3 cyclin-T1-3 cyclin-T1-4 cyclin-T1-5 cyclin-T1-5 cyclin-T1-5 cyclin-T1-3-like cyclin-T1-5-like cyclin-T1-3 cyclin-T1-3 cyclin-T1-3 cyclin-T1-5 cyclin-T1-3 cyclin-T1-4 cyclin-T1-3 cyclin-T1-3 cyclin-T1-3 cyclin-T1-5 cyclin-T1-3 cyclin-T1-3 cyclin-T1-4-like cyclin-T1-3-like cyclin-T1-3-like cyclin-T1-3 cyclin-T1-3-like cyclin-T1-1 cyclin-T1-3-like cyclin-T1-1 cyclin-T1-3 protein trichome birefringence-like 28 cyclin-T1-3 cyclin-T1-3 cyclin-T1-4 cyclin-T1-3-like cyclin-T1-3-like cyclin-T1-4-like cyclin-T1-4 cyclin-T1-3 cyclin-T1-3 cyclin-T1-4 cyclin-T1-1 cyclin-T1-3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03250 Viral life cycle - HIV-1 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 3
zma00561 Glycerolipid metabolism 2
zma00564 Glycerophospholipid metabolism 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03083 Polycomb repressive complex 3
tae04712 Circadian rhythm - plant 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 4
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 5
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839655 827698 827702 103834124 103853610 106358030 106425346 121203542 121203043 107891752 102615961 102620815 100778842 100802312 100803349 100266147 100265067 100256429 7497532 7492107 7456334 11444662 11416403 101260979 101250904 102605502 102600355 107785184 107766618 107764485 4328207 4349827 103626584 103630860 103654263 123091478 123091481 123110943 123448032 123427030 123399216 8064072 8071073 8070784 100845488 100832981 100829376 5724594
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