ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-m.4.tis	NRPA2	nuclear RNA polymerase A2
ath-u.5	NRPA2	nuclear RNA polymerase A2
ath-r.7	NRPA2	nuclear RNA polymerase A2
ath-m.9	NRPA2	nuclear RNA polymerase A2
ath-e.2	NRPA2	nuclear RNA polymerase A2
ath-m.4.bio	NRPA2	nuclear RNA polymerase A2
ath-m.4.hor	NRPA2	nuclear RNA polymerase A2
ath-m.4.lig	NRPA2	nuclear RNA polymerase A2
ath-m.4.str	NRPA2	nuclear RNA polymerase A2
bra-r.6	103828917	DNA-directed RNA polymerase I subunit 2
bna-r.1	106355081	DNA-directed RNA polymerase I subunit 2
bna-r.1	106421799	DNA-directed RNA polymerase I subunit 2
ghi-r.1	107915173	DNA-directed RNA polymerase I subunit 2
ghi-r.1	121207620	DNA-directed RNA polymerase I subunit 2
cit-r.1	102611701	DNA-directed RNA polymerase I subunit 2
gma-u.5	100812761	DNA-directed RNA polymerase I subunit 2
gma-u.5	100814083	DNA-directed RNA polymerase I subunit 2
vvi-u.5	100241130	DNA-directed RNA polymerase I subunit 2
ppo-u.5	7455807	DNA-directed RNA polymerase I subunit 2
mtr-u.5	11440716	DNA-directed RNA polymerase I subunit 2
sly-u.5	101261746	DNA-directed RNA polymerase I subunit 2
sot-r.1	102579628	DNA-directed RNA polymerase I subunit 2
nta-r.1	107817344	DNA-directed RNA polymerase I subunit 2-like
nta-r.1	107807249	DNA-directed RNA polymerase I subunit 2
osa-u.5	9270457	DNA-directed RNA polymerase I subunit 2
zma-u.5	103643410	DNA-directed RNA polymerase I subunit 2
tae-r.2	123181150	DNA-directed RNA polymerase I subunit 2
tae-r.2	123122163	DNA-directed RNA polymerase I subunit 2
tae-r.2	123046729	DNA-directed RNA polymerase I subunit 2
hvu-r.1	123432138	DNA-directed RNA polymerase I subunit 2
sbi-r.1	8085233	DNA-directed RNA polymerase I subunit 2
bdi-r.1	100834726	DNA-directed RNA polymerase I subunit 2
cre-r.1	CHLRE_07g322176v5	uncharacterized protein

Annotation

functional annotation

KEGG

ath03020 [list] [network] RNA polymerase (52 genes)

GO BP

GO:0009561 [list] [network] megagametogenesis	(80 genes)	IMP
GO:0006351 [list] [network] DNA-templated transcription	(160 genes)	IEA

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

Protein

NP_564341.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 1, cyto 1, vacu 1

(predict for NP_564341.2)

Subcellular
localization
TargetP

other 9

(predict for NP_564341.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.tis for NRPA2	ath-u.5 for NRPA2	ath-r.7 for NRPA2	ath-m.9 for NRPA2	ath-e.2 for NRPA2	ath-m.4.bio for NRPA2	ath-m.4.hor for NRPA2	ath-m.4.lig for NRPA2	ath-m.4.str for NRPA2	bra-r.6 for 103828917	bna-r.1 for 106355081	bna-r.1 for 106421799	ghi-r.1 for 107915173	ghi-r.1 for 121207620	cit-r.1 for 102611701	gma-u.5 for 100812761	gma-u.5 for 100814083	vvi-u.5 for 100241130	ppo-u.5 for 7455807	mtr-u.5 for 11440716	sly-u.5 for 101261746	sot-r.1 for 102579628	nta-r.1 for 107817344	nta-r.1 for 107807249	osa-u.5 for 9270457	zma-u.5 for 103643410	tae-r.2 for 123181150	tae-r.2 for 123122163	tae-r.2 for 123046729	hvu-r.1 for 123432138	sbi-r.1 for 8085233	bdi-r.1 for 100834726	cre-r.1 for CHLRE_07g322176v5

Ortholog

Ortholog ID: 10491

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

NRPA2

Function^*

nuclear RNA polymerase A2

DNA-directed RNA polymerase I subunit 2

DNA-directed RNA polymerase I subunit 2-like

DNA-directed RNA polymerase I subunit 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6
ath03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5
bra03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	2
bna03013	Nucleocytoplasmic transport	2
bna03015	mRNA surveillance pathway	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	2
bna03013	Nucleocytoplasmic transport	2
bna03015	mRNA surveillance pathway	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03018	RNA degradation	2
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	9
gma03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	5
gma03020	RNA polymerase	2
gma03008	Ribosome biogenesis in eukaryotes	2
gma03013	Nucleocytoplasmic transport	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	4
ppo03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5
mtr03018	RNA degradation	2
mtr03020	RNA polymerase	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	5
nta03008	Ribosome biogenesis in eukaryotes	4
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	6
nta03013	Nucleocytoplasmic transport	4
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4
osa03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	6
tae03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	6
tae03008	Ribosome biogenesis in eukaryotes	3
tae03040	Spliceosome	2
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	6
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4
sbi00970	Aminoacyl-tRNA biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

839872

103828917

106355081

106421799

107915173

121207620

102611701

100812761

100814083

100241130

7455807

11440716

101261746

102579628

107817344

107807249

9270457

103643410

123181150

123122163

123046729

123432138

8085233

100834726

5726408

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to NRPA2 (ath-m.4.tis coexpression data)

Top 50 enrichment test to NRPA2 (ath-m.4.tis coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	2	2	1	2	1	1	1	1	1	2	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to NRPA2 (ath-m.4.tis coexpression data)

Top 50 enrichment test to NRPA2 (ath-m.4.tis coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**