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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   NPQ4   Chlorophyll A-B binding family protein 
 ath-u.5   NPQ4   Chlorophyll A-B binding family protein 
 ath-r.7   NPQ4   Chlorophyll A-B binding family protein 
 ath-m.9   NPQ4   Chlorophyll A-B binding family protein 
 ath-e.2   NPQ4   Chlorophyll A-B binding family protein 
 ath-m.4.bio   NPQ4   Chlorophyll A-B binding family protein 
 ath-m.4.hor   NPQ4   Chlorophyll A-B binding family protein 
 ath-m.4.lig   NPQ4   Chlorophyll A-B binding family protein 
 ath-m.4.str   NPQ4   Chlorophyll A-B binding family protein 
 gma-u.5   100807355   photosystem II 22 kDa protein, chloroplastic 
 gma-u.5   100779417   photosystem II 22 kDa protein, chloroplastic-like 
 vvi-u.5   100245393   photosystem II 22 kDa protein, chloroplastic 
 ppo-u.5   7463155   photosystem II 22 kDa protein, chloroplastic 
 mtr-u.5   11419130   photosystem II 22 kDa protein, chloroplastic 
 sly-u.5   psbS   photosystem II subunit S 
 osa-u.5   4324933   photosystem II 22 kDa protein 1, chloroplastic 
 osa-u.5   4337500   photosystem II 22 kDa protein 2, chloroplastic-like 
 zma-u.5   542126   photosystem II subunit PsbS1 

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Top 50 coexpressed genes to NPQ4 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NPQ4 (ath-m.4.tis coexpression data)

CoexMap"841033"


athNPQ4 | Entrez gene ID : 841033      
Species ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 9 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00195 [list] [network] Photosynthesis (77 genes)
GO BP
GO:0010196 [list] [network] nonphotochemical quenching  (17 genes)  IMP  
GO:0010027 [list] [network] thylakoid membrane organization  (49 genes)  IMP  
GO CC
GO:0009517 [list] [network] PSII associated light-harvesting complex II  (7 genes)  TAS  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO MF
GO:0051738 [list] [network] xanthophyll binding  (1 genes)  TAS  
GO:0016168 [list] [network] chlorophyll binding  (21 genes)  TAS  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_001319163.1 [sequence] [blastp]
NP_175092.1 [sequence] [blastp]
NP_973971.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 1,  plas 1,  E.R. 1,  golg 1,  golg_plas 1,  E.R._plas 1,  mito_plas 1  (predict for NP_001319163.1)
chlo 7,  mito 1,  plas 1,  E.R. 1,  golg 1,  golg_plas 1,  E.R._plas 1,  mito_plas 1  (predict for NP_175092.1)
chlo 5,  plas 1,  E.R. 1,  E.R._plas 1  (predict for NP_973971.1)
Subcellular
localization
TargetP
chlo 5,  mito 4  (predict for NP_001319163.1)
chlo 5,  mito 4  (predict for NP_175092.1)
chlo 5,  mito 4  (predict for NP_973971.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
NPQ4

.
ath-u.5
for
NPQ4

.
ath-r.7
for
NPQ4

.
ath-m.9
for
NPQ4

.
ath-e.2
for
NPQ4

.
ath-m.4.bio
for
NPQ4

.
ath-m.4.hor
for
NPQ4

.
ath-m.4.lig
for
NPQ4

.
ath-m.4.str
for
NPQ4

.
gma-u.5
for
100807355

.
gma-u.5
for
100779417

.
vvi-u.5
for
100245393

.
ppo-u.5
for
7463155

.
mtr-u.5
for
11419130

.
sly-u.5
for
psbS

.
osa-u.5
for
4324933

.
osa-u.5
for
4337500

.
zma-u.5
for
542126

.


Ortholog ID: 6724
Species ath gma gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol NPQ4 LOC100779417 LOC100807355 psbS LOC4324933 LOC4337500 LOC542126 LOC103847722 LOC100245393 LOC7463155 LOC11419130 LOC123071564 LOC123062743 LOC123444787 LOC107923103 LOC107921067 LOC106350854 LOC106371893 CHLRE_01g016600v5 LOC8062389 LOC102593103 LOC102630024 LOC100827756 LOC107805098 LOC107778533
Function* Chlorophyll A-B binding family protein photosystem II 22 kDa protein, chloroplastic-like photosystem II 22 kDa protein, chloroplastic photosystem II subunit S photosystem II 22 kDa protein 1, chloroplastic photosystem II 22 kDa protein 2, chloroplastic-like photosystem II subunit PsbS1 photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein 1, chloroplastic photosystem II 22 kDa protein 1, chloroplastic photosystem II 22 kDa protein 1, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic-like photosystem II 22 kDa protein, chloroplastic uncharacterized protein photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic-like photosystem II 22 kDa protein, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 13
ath00710 Carbon fixation by Calvin cycle 9
ath00630 Glyoxylate and dicarboxylate metabolism 5
ath00195 Photosynthesis 3
ath00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 3
gma01200 Carbon metabolism 3
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 7
gma00710 Carbon fixation by Calvin cycle 6
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 11
sly00710 Carbon fixation by Calvin cycle 9
sly00195 Photosynthesis 5
sly00630 Glyoxylate and dicarboxylate metabolism 3
sly01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 12
osa00710 Carbon fixation by Calvin cycle 10
osa00630 Glyoxylate and dicarboxylate metabolism 6
osa00195 Photosynthesis 3
osa00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 15
zma00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra00196 Photosynthesis - antenna proteins 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00710 Carbon fixation by Calvin cycle 3
vvi01200 Carbon metabolism 3
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 7
ppo01200 Carbon metabolism 7
ppo00195 Photosynthesis 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr00710 Carbon fixation by Calvin cycle 4
mtr01200 Carbon metabolism 4
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 7
tae01200 Carbon metabolism 7
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 10
tae01200 Carbon metabolism 10
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 3
hvu00195 Photosynthesis 2
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00030 Pentose phosphate pathway 2
hvu00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 4
ghi00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 5
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 5
sbi00710 Carbon fixation by Calvin cycle 4
sbi00196 Photosynthesis - antenna proteins 2
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00630 Glyoxylate and dicarboxylate metabolism 5
sot00195 Photosynthesis 4
sot00710 Carbon fixation by Calvin cycle 3
sot00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 7
cit00195 Photosynthesis 5
cit00630 Glyoxylate and dicarboxylate metabolism 4
cit00710 Carbon fixation by Calvin cycle 4
cit01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 11
nta00710 Carbon fixation by Calvin cycle 11
nta01200 Carbon metabolism 11
nta00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00710 Carbon fixation by Calvin cycle 12
nta01200 Carbon metabolism 12
nta00630 Glyoxylate and dicarboxylate metabolism 11
nta00195 Photosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841033 100779417 100807355 101260830 4324933 4337500 542126 103847722 100245393 7463155 11419130 123071564 123062743 123444787 107923103 107921067 106350854 106371893 5715132 8062389 102593103 102630024 100827756 107805098 107778533
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